Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53051 * 109.48596 * 239.95804 * 2 1 3 5 5 N 1.46959 * 109.36246 * 181.61188 * 4 2 1 6 6 C 1.46901 * 110.99863 * 183.18486 * 5 4 2 7 7 C 1.53001 * 109.46712 * 66.04924 * 6 5 4 8 8 C 1.50704 * 109.46842 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00266 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00249 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99800 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00445 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46968 * 59.99522 * 12 10 8 14 14 H 1.48499 * 109.47513 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47225 * 299.99710 * 12 10 8 16 16 C 1.46958 * 110.88193 * 59.32006 * 5 4 2 17 17 H 1.09002 * 109.48960 * 60.64509 * 16 5 4 18 18 C 1.52996 * 109.48857 * 180.71190 * 16 5 4 19 19 C 1.53051 * 109.36194 * 300.68035 * 16 5 4 20 20 N 1.46950 * 109.36688 * 58.40206 * 19 16 5 21 21 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 23 23 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 24 24 H 1.09001 * 109.48856 * 301.57250 * 4 2 1 25 25 H 1.08988 * 109.49185 * 61.62082 * 4 2 1 26 26 H 1.09003 * 109.46832 * 186.04529 * 6 5 4 27 27 H 1.08999 * 109.47537 * 306.04526 * 6 5 4 28 28 H 1.09003 * 109.47149 * 299.99410 * 7 6 5 29 29 H 1.08998 * 109.47731 * 60.00011 * 7 6 5 30 30 H 0.96993 * 119.99828 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46964 * 60.00469 * 18 16 5 32 32 H 1.09005 * 109.46979 * 179.97438 * 18 16 5 33 33 H 1.09000 * 109.47238 * 299.99626 * 18 16 5 34 34 H 1.09004 * 109.48848 * 178.36731 * 19 16 5 35 35 H 1.09001 * 109.48833 * 298.43199 * 19 16 5 36 36 H 1.00900 * 111.00430 * 176.81086 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 3.5096 -0.7546 -1.2269 6 6 4.0410 -1.3743 -2.4482 7 6 3.7144 -0.4892 -3.6527 8 6 4.2601 -1.1246 -4.9056 9 1 4.7874 -2.0654 -4.8484 10 6 4.0870 -0.5045 -6.1248 11 7 3.4453 0.6414 -6.1944 12 14 4.7640 -1.2917 -7.6776 13 1 4.1461 -2.6290 -7.8644 14 1 4.4470 -0.4327 -8.8468 15 1 6.2366 -1.4394 -7.5562 16 6 4.0003 -1.4484 -0.0279 17 1 3.6366 -2.4760 -0.0279 18 6 5.5303 -1.4480 -0.0283 19 6 3.4897 -0.7260 1.2210 20 7 2.0207 -0.6938 1.1990 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.6546 -1.7417 -1.2629 25 1 1.7015 -0.1930 -2.1394 26 1 5.1219 -1.4831 -2.3597 27 1 3.5870 -2.3558 -2.5848 28 1 2.6334 -0.3804 -3.7413 29 1 4.1684 0.4923 -3.5162 30 1 3.3233 1.0775 -7.0522 31 1 5.8933 -0.4202 -0.0272 32 1 5.8939 -1.9623 0.8614 33 1 5.8936 -1.9608 -0.9188 34 1 3.8284 -1.2557 2.1115 35 1 3.8757 0.2932 1.2349 36 1 1.6557 -0.2682 2.0378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083118772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -28.012648 kcal Electronic energy + Delta-G solvation = -14723.914276 eV Core-core repulsion = 12434.386631 eV Total energy + Delta-G solvation = -2289.527645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45131 -36.59800 -35.11868 -33.97143 -31.48679 -30.15191 -27.40047 -25.87273 -25.30406 -22.43245 -21.81820 -20.53890 -18.56494 -17.21170 -16.70710 -16.45475 -16.15085 -15.71351 -15.15900 -14.90824 -14.48335 -14.10210 -13.70880 -13.46585 -13.24481 -12.83506 -12.68427 -12.66949 -12.60990 -12.47015 -12.05934 -11.89715 -11.83197 -11.46555 -11.21007 -11.12153 -10.53923 -9.48794 -9.18799 -8.20927 -6.32796 1.39115 1.42668 1.50622 2.39406 2.99682 3.11930 3.19829 3.85918 3.94213 4.10193 4.28179 4.30584 4.36520 4.48058 4.59045 4.69664 4.75096 4.80622 4.86282 4.90664 4.97591 5.03527 5.04500 5.16244 5.31575 5.37593 5.44367 5.63603 5.77517 5.95138 6.08628 6.29325 6.33915 6.54947 6.83687 7.36264 8.91076 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039728 B = 0.007366 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.617649 B = 3800.521363 C = 4332.417420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.091 3.909 3 H 0.035 0.965 4 C 0.064 3.936 5 N -0.547 5.547 6 C 0.076 3.924 7 C 0.040 3.960 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.967 3.033 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.075 3.925 17 H 0.033 0.967 18 C -0.141 4.141 19 C 0.071 3.929 20 N -0.688 5.688 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.011 0.989 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -2.797 14.905 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 H 0.053 0.947 4 C -0.065 4.065 5 N -0.272 5.272 6 C -0.052 4.052 7 C 0.003 3.997 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.034 4.034 17 H 0.051 0.949 18 C -0.199 4.199 19 C -0.058 4.058 20 N -0.321 5.321 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.522 -2.807 14.545 14.892 hybrid contribution 0.099 0.005 -1.059 1.063 sum -1.423 -2.802 13.487 13.848 Atomic orbital electron populations 1.21724 0.92403 1.02639 1.02686 1.21449 0.96164 0.94816 0.89530 0.94659 1.22151 0.87686 0.98607 0.98053 1.62237 1.08297 1.54215 1.02468 1.22055 0.99322 0.94690 0.89084 1.18882 0.94796 0.94320 0.91744 1.21594 1.36461 1.07321 0.93210 0.92267 1.25973 0.95391 0.95370 1.02859 1.70107 1.42793 1.17794 1.26389 0.85474 0.79165 0.78407 0.77835 1.19225 1.20653 1.19027 1.21794 0.96173 0.95375 0.90040 0.94908 1.21848 0.93130 1.02470 1.02476 1.22005 0.87470 0.99139 0.97218 1.60513 1.08600 1.58207 1.04824 0.92086 0.90351 0.92247 0.95683 0.92375 0.90840 0.97058 0.99075 0.99094 0.92713 0.92428 0.89494 0.93163 0.87888 0.94791 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.46 71.98 0.68 -2.51 16 2 C 0.09 2.62 3.19 44.92 0.14 2.76 16 3 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.06 2.37 4.69 86.31 0.40 2.78 16 5 N -0.55 -21.29 4.53 -870.49 -3.94 -25.23 16 6 C 0.08 3.42 4.66 86.30 0.40 3.82 16 7 C 0.04 2.23 4.90 29.85 0.15 2.37 16 8 C -0.55 -32.21 9.11 25.60 0.23 -31.97 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 12 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C 0.07 2.30 2.56 44.92 0.12 2.41 16 17 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 18 C -0.14 -3.82 8.89 71.98 0.64 -3.18 16 19 C 0.07 1.76 6.00 86.31 0.52 2.27 16 20 N -0.69 -16.89 6.55 -491.14 -3.22 -20.10 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 2.48 6.33 -2.39 -0.02 2.47 16 26 H 0.07 3.20 5.74 -2.39 -0.01 3.18 16 27 H 0.01 0.51 8.12 -2.39 -0.02 0.50 16 28 H -0.01 -0.54 6.49 -2.39 -0.02 -0.56 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.05 1.49 6.15 -2.39 -0.01 1.48 16 34 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.35 6.65 8.83 -89.69 -0.79 5.86 16 Total: -1.00 -66.40 281.43 -0.85 -67.25 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.24 Total: 9.32 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 3.75 Total: -20.65 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -6.87 Total: -102.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.40 -0.85 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.241 kcal (2) G-P(sol) polarization free energy of solvation -66.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds