Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48691 * 2 1 4 4 C 1.53045 * 109.51099 * 239.93819 * 2 1 3 5 5 N 1.46954 * 109.36781 * 181.61673 * 4 2 1 6 6 C 1.46964 * 110.87851 * 59.32304 * 5 4 2 7 7 H 1.09002 * 109.50550 * 60.65448 * 6 5 4 8 8 C 1.52997 * 109.49017 * 180.71067 * 6 5 4 9 9 C 1.53049 * 109.36525 * 300.68063 * 6 5 4 10 10 N 1.46958 * 109.36416 * 58.39876 * 9 6 5 11 11 C 1.46898 * 111.00200 * 176.81257 * 10 9 6 12 12 C 1.53001 * 109.47200 * 293.95694 * 11 10 9 13 13 C 1.50697 * 109.47081 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00408 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00359 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99769 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47377 * 120.00002 * 17 15 13 20 20 H 1.48497 * 109.46911 * 239.99948 * 17 15 13 21 21 H 1.08995 * 109.47185 * 299.96024 * 1 2 3 22 22 H 1.09000 * 109.46843 * 59.96499 * 1 2 3 23 23 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.48893 * 301.59054 * 4 2 1 25 25 H 1.09009 * 109.48857 * 61.63009 * 4 2 1 26 26 H 1.00899 * 111.00183 * 295.45843 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.89123 * 8 6 5 28 28 H 1.09001 * 109.46832 * 59.89314 * 8 6 5 29 29 H 1.09004 * 109.47261 * 299.89295 * 8 6 5 30 30 H 1.09000 * 109.49026 * 178.36486 * 9 6 5 31 31 H 1.09004 * 109.48930 * 298.43782 * 9 6 5 32 32 H 1.09000 * 109.46970 * 53.95655 * 11 10 9 33 33 H 1.08999 * 109.47643 * 173.95443 * 11 10 9 34 34 H 1.09008 * 109.46509 * 299.99848 * 12 11 10 35 35 H 1.08999 * 109.47027 * 59.99373 * 12 11 10 36 36 H 0.96994 * 120.00179 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2485 5 7 3.5102 -0.7547 -1.2259 6 6 4.0005 -1.4482 -0.0265 7 1 3.6371 -2.4759 -0.0262 8 6 5.5305 -1.4477 -0.0262 9 6 3.4894 -0.7256 1.2221 10 7 2.0203 -0.6935 1.1994 11 6 1.4884 -0.0736 2.4203 12 6 1.8145 -0.9583 3.6252 13 6 1.2693 -0.3220 4.8778 14 1 0.7433 0.6193 4.8203 15 6 1.4422 -0.9418 6.0972 16 7 2.0825 -2.0885 6.1672 17 14 0.7658 -0.1535 7.6498 18 1 0.0918 1.1234 7.3033 19 1 -0.2113 -1.0728 8.2865 20 1 1.8799 0.1157 8.5940 21 1 -0.3633 0.5132 0.8903 22 1 -0.3633 0.5144 -0.8897 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6552 -1.7419 -1.2623 25 1 1.7023 -0.1935 -2.1393 26 1 3.8932 0.1767 -1.2870 27 1 5.8938 -1.9604 0.8644 28 1 5.8934 -0.4199 -0.0273 29 1 5.8942 -1.9624 -0.9156 30 1 3.8278 -1.2550 2.1127 31 1 3.8752 0.2938 1.2358 32 1 1.9422 0.9080 2.5568 33 1 0.4075 0.0351 2.3314 34 1 1.3606 -1.9399 3.4886 35 1 2.8954 -1.0670 3.7141 36 1 2.2044 -2.5243 7.0251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -7.796550 kcal Electronic energy + Delta-G solvation = -14743.344583 eV Core-core repulsion = 12454.693574 eV Total energy + Delta-G solvation = -2288.651009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.31929 -35.06345 -33.37665 -32.39510 -29.67966 -28.83330 -25.52171 -24.76857 -23.52472 -20.96058 -20.43836 -19.64474 -16.45888 -15.38544 -15.29419 -15.09492 -14.60361 -14.26757 -13.76872 -13.38991 -12.92617 -12.44225 -12.15965 -11.98948 -11.62716 -11.56920 -11.39799 -11.24173 -10.93985 -10.88041 -10.69449 -10.62523 -10.51501 -9.79669 -9.38446 -9.10781 -8.34359 -8.23761 -7.70740 -6.00609 -4.03063 3.30034 3.37438 3.41337 4.23925 4.38123 4.49406 5.08282 5.20973 5.28887 5.35367 5.38097 5.44260 5.55416 5.70319 5.78456 5.89176 5.96759 6.03314 6.12605 6.21657 6.27612 6.33364 6.35307 6.47874 6.53148 6.98676 7.11236 7.43644 7.52752 7.57703 7.79205 7.89026 8.07151 8.42802 9.04306 9.60639 11.10748 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.007384 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.421649 B = 3790.820932 C = 4319.874328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 H 0.029 0.971 4 C 0.066 3.934 5 N -0.684 5.684 6 C 0.083 3.917 7 H 0.088 0.912 8 C -0.143 4.143 9 C 0.024 3.976 10 N -0.530 5.530 11 C 0.059 3.941 12 C 0.029 3.971 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.332 0.668 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.023 0.977 32 H 0.015 0.985 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 3.145 -13.005 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 H 0.047 0.953 4 C -0.064 4.064 5 N -0.312 5.312 6 C -0.027 4.027 7 H 0.107 0.893 8 C -0.201 4.201 9 C -0.105 4.105 10 N -0.255 5.255 11 C -0.068 4.068 12 C -0.008 4.008 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.981 1.958 -13.319 13.608 hybrid contribution -0.268 1.977 1.801 2.688 sum 1.714 3.935 -11.519 12.292 Atomic orbital electron populations 1.21830 0.94255 1.02667 1.01398 1.22350 0.96390 0.95329 0.92861 0.95316 1.22117 0.87391 1.01440 0.95420 1.60910 1.07638 1.22755 1.39916 1.21665 0.94617 0.99100 0.87290 0.89344 1.21769 0.94403 1.01727 1.02190 1.22866 0.88606 0.98808 1.00264 1.62245 1.07361 1.53723 1.02180 1.22432 0.98953 0.96056 0.89354 1.19080 0.96855 0.95134 0.89722 1.21227 1.36040 1.06797 0.92010 0.92833 1.24994 0.95319 0.94923 0.99066 1.69979 1.41826 1.16264 1.25093 0.86547 0.78774 0.79393 0.83352 1.19809 1.20934 1.21025 0.92001 0.92847 0.91692 0.90169 0.90933 0.85096 0.91747 0.93104 0.91965 0.89100 0.95886 0.96651 0.91416 0.95757 0.96657 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.89 37.16 0.33 -1.68 16 2 C 0.04 0.63 2.56 -67.65 -0.17 0.45 16 3 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.07 0.88 6.00 -3.77 -0.02 0.85 16 5 N -0.68 -9.04 6.56 -106.58 -0.70 -9.73 16 6 C 0.08 1.20 3.20 -67.65 -0.22 0.98 16 7 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 8 C -0.14 -1.73 9.45 37.16 0.35 -1.37 16 9 C 0.02 0.42 4.69 -3.77 -0.02 0.40 16 10 N -0.53 -9.85 4.53 -226.49 -1.03 -10.88 16 11 C 0.06 1.27 4.66 -3.82 -0.02 1.25 16 12 C 0.03 0.78 4.90 -27.88 -0.14 0.64 16 13 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.06 0.94 6.15 -51.93 -0.32 0.62 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.33 4.06 8.80 -39.29 -0.35 3.71 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.78 6.33 -51.93 -0.33 1.45 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 1.44 5.74 -51.93 -0.30 1.14 16 34 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.02 0.42 6.49 -51.93 -0.34 0.09 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -29.87 281.40 -8.32 -38.20 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.24 Total: -0.17 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.31 Total: -12.16 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.99 Total: -46.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.87 -8.32 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.400 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds