Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.48691 * 2 1 4 4 C 1.53045 * 109.51099 * 239.93819 * 2 1 3 5 5 N 1.46954 * 109.36781 * 181.61673 * 4 2 1 6 6 C 1.46964 * 110.87851 * 59.32304 * 5 4 2 7 7 H 1.09002 * 109.50550 * 60.65448 * 6 5 4 8 8 C 1.52997 * 109.49017 * 180.71067 * 6 5 4 9 9 C 1.53049 * 109.36525 * 300.68063 * 6 5 4 10 10 N 1.46958 * 109.36416 * 58.39876 * 9 6 5 11 11 C 1.46898 * 111.00200 * 176.81257 * 10 9 6 12 12 C 1.53001 * 109.47200 * 293.95694 * 11 10 9 13 13 C 1.50697 * 109.47081 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00408 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99626 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00359 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99769 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47213 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47377 * 120.00002 * 17 15 13 20 20 H 1.48497 * 109.46911 * 239.99948 * 17 15 13 21 21 H 1.08995 * 109.47185 * 299.96024 * 1 2 3 22 22 H 1.09000 * 109.46843 * 59.96499 * 1 2 3 23 23 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.48893 * 301.59054 * 4 2 1 25 25 H 1.09009 * 109.48857 * 61.63009 * 4 2 1 26 26 H 1.00899 * 111.00183 * 295.45843 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.89123 * 8 6 5 28 28 H 1.09001 * 109.46832 * 59.89314 * 8 6 5 29 29 H 1.09004 * 109.47261 * 299.89295 * 8 6 5 30 30 H 1.09000 * 109.49026 * 178.36486 * 9 6 5 31 31 H 1.09004 * 109.48930 * 298.43782 * 9 6 5 32 32 H 1.09000 * 109.46970 * 53.95655 * 11 10 9 33 33 H 1.08999 * 109.47643 * 173.95443 * 11 10 9 34 34 H 1.09008 * 109.46509 * 299.99848 * 12 11 10 35 35 H 1.08999 * 109.47027 * 59.99373 * 12 11 10 36 36 H 0.96994 * 120.00179 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2485 5 7 3.5102 -0.7547 -1.2259 6 6 4.0005 -1.4482 -0.0265 7 1 3.6371 -2.4759 -0.0262 8 6 5.5305 -1.4477 -0.0262 9 6 3.4894 -0.7256 1.2221 10 7 2.0203 -0.6935 1.1994 11 6 1.4884 -0.0736 2.4203 12 6 1.8145 -0.9583 3.6252 13 6 1.2693 -0.3220 4.8778 14 1 0.7433 0.6193 4.8203 15 6 1.4422 -0.9418 6.0972 16 7 2.0825 -2.0885 6.1672 17 14 0.7658 -0.1535 7.6498 18 1 0.0918 1.1234 7.3033 19 1 -0.2113 -1.0728 8.2865 20 1 1.8799 0.1157 8.5940 21 1 -0.3633 0.5132 0.8903 22 1 -0.3633 0.5144 -0.8897 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6552 -1.7419 -1.2623 25 1 1.7023 -0.1935 -2.1393 26 1 3.8932 0.1767 -1.2870 27 1 5.8938 -1.9604 0.8644 28 1 5.8934 -0.4199 -0.0273 29 1 5.8942 -1.9624 -0.9156 30 1 3.8278 -1.2550 2.1127 31 1 3.8752 0.2938 1.2358 32 1 1.9422 0.9080 2.5568 33 1 0.4075 0.0351 2.3314 34 1 1.3606 -1.9399 3.4886 35 1 2.8954 -1.0670 3.7141 36 1 2.2044 -2.5243 7.0251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083118773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -29.403951 kcal Electronic energy + Delta-G solvation = -14744.281551 eV Core-core repulsion = 12454.693574 eV Total energy + Delta-G solvation = -2289.587977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63404 -36.56719 -35.11077 -33.98992 -31.37249 -30.17274 -27.26844 -25.90223 -25.25273 -22.38935 -21.93672 -21.08112 -18.59713 -16.83871 -16.58420 -16.56251 -16.23883 -15.75013 -15.10680 -14.98857 -14.37795 -14.04445 -13.71549 -13.43298 -13.15394 -12.90494 -12.70323 -12.67818 -12.50646 -12.45779 -12.09250 -12.04201 -11.82527 -11.74427 -11.28494 -11.23374 -10.57199 -9.48757 -9.14574 -8.23287 -6.35284 1.37644 1.38219 1.51508 2.37212 2.90889 3.09718 3.27062 3.88050 4.01042 4.02616 4.16533 4.22647 4.41590 4.46549 4.53690 4.61397 4.68389 4.82755 4.88211 4.92000 4.93845 5.02188 5.13160 5.17473 5.28654 5.35660 5.42139 5.60666 5.75024 5.95212 6.05410 6.26597 6.31038 6.46358 6.81583 7.34046 8.88993 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.007384 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.421649 B = 3790.820932 C = 4319.874328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 H 0.032 0.968 4 C 0.072 3.928 5 N -0.676 5.676 6 C 0.092 3.908 7 H 0.073 0.927 8 C -0.136 4.136 9 C 0.027 3.973 10 N -0.544 5.544 11 C 0.076 3.924 12 C 0.040 3.960 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.277 1.277 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.342 0.658 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.010 0.990 33 H 0.072 0.928 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 4.400 -14.062 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 H 0.050 0.950 4 C -0.058 4.058 5 N -0.305 5.305 6 C -0.019 4.019 7 H 0.092 0.908 8 C -0.194 4.194 9 C -0.103 4.103 10 N -0.269 5.269 11 C -0.051 4.051 12 C 0.002 3.998 13 C -0.585 4.585 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.624 3.224 -14.404 14.850 hybrid contribution -0.144 1.560 2.087 2.610 sum 1.480 4.784 -12.317 13.296 Atomic orbital electron populations 1.21816 0.93258 1.02476 1.02259 1.22527 0.97259 0.95341 0.91920 0.95044 1.22153 0.87176 1.01113 0.95377 1.60905 1.07758 1.23356 1.38468 1.21560 0.96115 0.97921 0.86254 0.90829 1.21720 0.92444 1.02557 1.02709 1.22863 0.88041 0.98784 1.00615 1.62185 1.08130 1.54258 1.02294 1.22053 0.99263 0.94586 0.89219 1.18883 0.94788 0.94327 0.91766 1.21634 1.36429 1.07215 0.93205 0.92365 1.25977 0.95384 0.95377 1.02883 1.70115 1.42849 1.17759 1.26288 0.85366 0.78234 0.78726 0.78516 1.18632 1.20153 1.20233 0.93592 0.89491 0.92399 0.91034 0.87747 0.83968 0.92216 0.92115 0.90452 0.92440 0.95777 0.97164 0.90997 0.99123 0.99085 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.89 71.98 0.64 -3.04 16 2 C 0.04 1.13 2.56 44.92 0.11 1.25 16 3 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.07 1.71 6.00 86.31 0.52 2.23 16 5 N -0.68 -16.30 6.56 -491.12 -3.22 -19.52 16 6 C 0.09 2.59 3.20 44.92 0.14 2.73 16 7 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 8 C -0.14 -3.12 9.45 71.98 0.68 -2.44 16 9 C 0.03 0.95 4.69 86.31 0.40 1.35 16 10 N -0.54 -20.42 4.53 -870.49 -3.94 -24.36 16 11 C 0.08 3.38 4.66 86.30 0.40 3.78 16 12 C 0.04 2.20 4.90 29.85 0.15 2.35 16 13 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 14 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 17 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H 0.05 1.34 6.15 -2.39 -0.01 1.33 16 22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.34 7.36 8.80 -89.69 -0.79 6.57 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.06 2.39 6.33 -2.39 -0.02 2.38 16 31 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.01 0.46 8.12 -2.39 -0.02 0.44 16 33 H 0.07 3.11 5.74 -2.39 -0.01 3.09 16 34 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 35 H -0.01 -0.54 6.49 -2.39 -0.02 -0.56 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.26 281.40 -0.86 -66.12 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.25 Total: 11.22 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.75 Total: -23.00 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -6.88 Total: -101.22 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.26 -0.86 -66.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.720 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds