Wall clock time and date at job start Mon Mar 30 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49049 * 2 1 4 4 C 1.53051 * 109.49194 * 120.04493 * 2 1 3 5 5 N 1.46954 * 109.36251 * 61.58144 * 4 2 1 6 6 C 1.46906 * 110.99708 * 183.18791 * 5 4 2 7 7 C 1.53001 * 109.46863 * 66.05402 * 6 5 4 8 8 C 1.50699 * 109.47252 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99523 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00401 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99527 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47393 * 90.00218 * 12 10 8 14 14 H 1.48506 * 109.47107 * 209.99888 * 12 10 8 15 15 H 1.48502 * 109.47231 * 329.99819 * 12 10 8 16 16 C 1.46958 * 110.87928 * 59.32958 * 5 4 2 17 17 H 1.08993 * 109.49121 * 60.66060 * 16 5 4 18 18 C 1.53006 * 109.48992 * 180.71066 * 16 5 4 19 19 C 1.53051 * 109.35883 * 300.67259 * 16 5 4 20 20 N 1.46954 * 109.36641 * 58.40730 * 19 16 5 21 21 H 1.09005 * 109.46729 * 300.00036 * 1 2 3 22 22 H 1.08995 * 109.47344 * 59.99962 * 1 2 3 23 23 H 1.09002 * 109.47156 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.49317 * 181.55697 * 4 2 1 25 25 H 1.09003 * 109.48448 * 301.59876 * 4 2 1 26 26 H 1.09007 * 109.46916 * 186.04877 * 6 5 4 27 27 H 1.08993 * 109.47485 * 306.04718 * 6 5 4 28 28 H 1.08997 * 109.46997 * 299.99482 * 7 6 5 29 29 H 1.08997 * 109.47438 * 59.99870 * 7 6 5 30 30 H 0.97005 * 119.99745 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.46935 * 59.99525 * 18 16 5 32 32 H 1.08995 * 109.47048 * 179.97438 * 18 16 5 33 33 H 1.09003 * 109.46911 * 299.99526 * 18 16 5 34 34 H 1.09011 * 109.48891 * 178.37100 * 19 16 5 35 35 H 1.08996 * 109.49277 * 298.41100 * 19 16 5 36 36 H 1.00904 * 111.00403 * 176.81080 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7224 1.2489 5 7 1.5813 -2.1181 1.2266 6 6 1.9882 -2.8258 2.4479 7 6 1.2625 -2.2231 3.6524 8 6 1.6794 -2.9495 4.9052 9 1 2.3906 -3.7602 4.8479 10 6 1.1530 -2.5790 6.1245 11 7 0.2874 -1.5914 6.1943 12 14 1.6694 -3.4800 7.6773 13 1 2.8567 -2.8105 8.2664 14 1 0.5529 -3.4590 8.6562 15 1 2.0089 -4.8866 7.3437 16 6 2.0720 -2.8119 0.0277 17 1 3.1619 -2.8119 0.0280 18 6 1.5615 -4.2543 0.0276 19 6 1.5613 -2.0895 -1.2213 20 7 2.0207 -0.6938 -1.1990 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1303 -0.6983 1.2630 25 1 1.6544 -0.2263 2.1394 26 1 1.7304 -3.8813 2.3592 27 1 3.0649 -2.7251 2.5846 28 1 1.5203 -1.1678 3.7411 29 1 0.1858 -2.3239 3.5157 30 1 -0.0832 -1.3310 7.0521 31 1 0.4715 -4.2538 0.0265 32 1 1.9253 -4.7684 -0.8619 33 1 1.9237 -4.7679 0.9182 34 1 1.9478 -2.5854 -2.1118 35 1 0.4717 -2.1139 -1.2356 36 1 1.7412 -0.2076 -2.0379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083118774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:29 Heat of formation + Delta-G solvation = -2.600476 kcal Electronic energy + Delta-G solvation = -14890.104828 eV Core-core repulsion = 12601.679137 eV Total energy + Delta-G solvation = -2288.425691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29398 -35.11746 -33.18683 -32.26786 -29.63633 -28.40616 -25.58002 -25.43754 -23.47602 -21.20391 -20.16481 -18.47916 -16.69028 -16.05772 -15.10331 -14.82029 -14.51783 -13.96145 -13.69711 -13.55761 -13.06270 -12.49092 -12.09948 -11.89500 -11.78084 -11.51060 -11.30766 -11.11650 -10.92253 -10.77980 -10.56731 -10.45311 -10.12837 -9.66760 -9.28547 -9.07675 -8.33522 -8.29867 -7.61132 -5.97660 -3.99712 3.33177 3.39337 3.42682 4.34892 4.38874 4.56009 5.08095 5.24838 5.32268 5.38384 5.46690 5.57875 5.61269 5.82235 5.82438 5.92790 6.07265 6.11260 6.22087 6.28579 6.36012 6.39293 6.52945 6.60971 6.64432 7.04519 7.15094 7.41667 7.61580 7.65098 7.85110 7.94236 8.11807 8.46792 9.07611 9.63756 11.13695 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.007432 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.417661 B = 3766.529540 C = 4151.601668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.079 0.921 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.058 3.942 7 C 0.030 3.970 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.080 3.920 17 H 0.039 0.961 18 C -0.146 4.146 19 C 0.063 3.937 20 N -0.688 5.688 21 H 0.061 0.939 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.023 0.977 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 0.580 -13.689 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 H 0.097 0.903 4 C -0.066 4.066 5 N -0.257 5.257 6 C -0.068 4.068 7 C -0.007 4.007 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.029 4.029 17 H 0.057 0.943 18 C -0.204 4.204 19 C -0.067 4.067 20 N -0.318 5.318 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.638 0.519 -13.305 13.416 hybrid contribution 0.187 -0.284 0.760 0.832 sum 1.825 0.236 -12.546 12.680 Atomic orbital electron populations 1.22359 0.96892 1.03170 1.01009 1.21662 0.93450 0.97112 0.90401 0.90273 1.22153 0.97419 0.89822 0.97248 1.62266 1.59505 1.01674 1.02212 1.22419 0.97064 0.98031 0.89316 1.19071 0.96097 0.95829 0.89748 1.21208 1.25367 1.17384 0.92042 0.92859 1.24986 0.95089 0.95194 0.99030 1.69974 1.29968 1.28190 1.25129 0.86609 0.78119 0.80187 0.83162 1.20727 1.21219 1.19909 1.21596 0.97058 0.93613 0.90636 0.94288 1.21878 1.02006 0.95018 1.01515 1.22030 0.98311 0.88896 0.97432 1.60735 1.63291 1.02990 1.04753 0.91951 0.94137 0.90968 0.94986 0.89290 0.91505 0.96439 0.96633 0.95858 0.93053 0.91974 0.92893 0.91719 0.91272 0.93989 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.83 37.16 0.33 -2.16 16 2 C 0.08 1.21 3.69 -67.65 -0.25 0.96 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.06 1.10 4.84 -3.77 -0.02 1.09 16 5 N -0.53 -9.88 3.84 -226.49 -0.87 -10.75 16 6 C 0.06 1.26 4.66 -3.82 -0.02 1.24 16 7 C 0.03 0.79 4.90 -27.88 -0.14 0.65 16 8 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.08 1.26 2.56 -67.65 -0.17 1.09 16 17 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 18 C -0.15 -2.07 8.89 37.16 0.33 -1.74 16 19 C 0.06 0.84 5.62 -3.77 -0.02 0.82 16 20 N -0.69 -9.11 6.70 -106.58 -0.71 -9.82 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.75 6.34 -51.93 -0.33 1.42 16 26 H 0.07 1.42 5.74 -51.93 -0.30 1.12 16 27 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.02 0.43 6.49 -51.93 -0.34 0.09 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.98 6.15 -51.93 -0.32 0.66 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.04 0.58 6.35 -51.93 -0.33 0.25 16 36 H 0.34 3.66 8.89 -39.29 -0.35 3.31 16 LS Contribution 276.60 15.07 4.17 4.17 Total: -1.00 -29.92 276.60 -8.11 -38.02 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.04 Total: -0.44 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.37 Total: -11.70 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.85 Total: -46.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.92 -8.11 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083118774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.424 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds