Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.49484 * 2 1 4 4 C 1.53054 * 109.49203 * 239.94920 * 2 1 3 5 5 N 1.46955 * 109.36808 * 181.63497 * 4 2 1 6 6 C 1.46901 * 110.99835 * 183.19253 * 5 4 2 7 7 C 1.53000 * 109.46769 * 170.00204 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47116 * 59.99479 * 13 11 9 15 15 H 1.48490 * 109.47381 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46756 * 300.00079 * 13 11 9 17 17 C 1.46958 * 110.87954 * 59.32271 * 5 4 2 18 18 C 1.53046 * 109.36205 * 300.67905 * 17 5 4 19 19 N 1.46955 * 109.36588 * 58.40292 * 18 17 5 20 20 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47244 * 300.04929 * 1 2 3 22 22 H 1.09007 * 109.46875 * 60.04597 * 1 2 3 23 23 H 1.09002 * 109.48344 * 61.66553 * 4 2 1 24 24 H 1.08998 * 109.49062 * 301.60955 * 4 2 1 25 25 H 1.09002 * 109.47401 * 49.99911 * 6 5 4 26 26 H 1.09001 * 109.46874 * 289.99924 * 6 5 4 27 27 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 29 29 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 30 30 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 31 31 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.48699 * 60.64519 * 17 5 4 33 33 H 1.08993 * 109.48441 * 180.71371 * 17 5 4 34 34 H 1.08997 * 109.49681 * 298.43123 * 18 17 5 35 35 H 1.09001 * 109.50181 * 178.37863 * 18 17 5 36 36 H 1.00900 * 111.00421 * 176.80463 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 3.5097 -0.7553 -1.2265 6 6 4.0411 -1.3750 -2.4478 7 6 5.5561 -1.1696 -2.5061 8 6 6.1095 -1.8145 -3.7784 9 6 7.6016 -1.6117 -3.8363 10 1 8.1049 -1.0759 -3.0450 11 6 8.3244 -2.1100 -4.8995 12 7 7.7117 -2.7628 -5.8628 13 14 10.1741 -1.8591 -4.9709 14 1 10.8051 -2.4871 -3.7822 15 1 10.7112 -2.4849 -6.2057 16 1 10.4764 -0.4052 -4.9815 17 6 3.9999 -1.4493 -0.0274 18 6 3.4892 -0.7268 1.2214 19 7 2.0202 -0.6940 1.1990 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5146 0.8895 22 1 -0.3633 0.5132 -0.8905 23 1 1.7022 -0.1927 -2.1393 24 1 1.6543 -1.7416 -1.2630 25 1 3.5780 -0.9141 -3.3203 26 1 3.8191 -2.4422 -2.4398 27 1 5.7780 -0.1024 -2.5141 28 1 6.0191 -1.6304 -1.6337 29 1 5.8876 -2.8817 -3.7709 30 1 5.6464 -1.3532 -4.6507 31 1 8.2202 -3.1136 -6.6106 32 1 3.6358 -2.4766 -0.0276 33 1 5.0898 -1.4493 -0.0275 34 1 3.8755 0.2924 1.2355 35 1 3.8276 -1.2563 2.1120 36 1 1.6551 -0.2684 2.0378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083814835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -12.709900 kcal Electronic energy + Delta-G solvation = -14244.618152 eV Core-core repulsion = 11955.754084 eV Total energy + Delta-G solvation = -2288.864068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10433 -35.46053 -33.29187 -32.22268 -31.08509 -27.45718 -26.91413 -24.38990 -22.83286 -21.61656 -19.75178 -19.62433 -16.63527 -16.13953 -15.12968 -15.03494 -14.65013 -14.35209 -14.31217 -13.72891 -13.27976 -12.52146 -12.26072 -12.15198 -11.91627 -11.56164 -11.30347 -11.06410 -11.01077 -10.77080 -10.71146 -10.44622 -10.37355 -9.56280 -9.28707 -9.03161 -8.55365 -8.30702 -8.01141 -5.96230 -3.98252 3.35958 3.39955 3.42746 4.08732 4.14896 4.49917 4.83772 5.02111 5.15469 5.32533 5.39380 5.41909 5.50244 5.54337 5.64967 5.73747 5.82837 5.90997 5.97959 6.08625 6.12033 6.20653 6.36061 6.74008 6.80251 6.92130 7.16284 7.24586 7.40749 7.47325 7.72076 7.87644 8.04365 8.47774 9.08705 9.65463 11.15258 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067354 B = 0.005237 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.616139 B = 5344.783484 C = 5617.211464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.045 0.955 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.057 3.943 7 C -0.104 4.104 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.053 3.947 18 C 0.060 3.940 19 N -0.689 5.689 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 4.534 12.270 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.063 0.937 4 C -0.068 4.068 5 N -0.267 5.267 6 C -0.070 4.070 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.075 4.075 18 C -0.069 4.069 19 N -0.321 5.321 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.039 4.296 11.825 17.414 hybrid contribution 0.955 0.153 0.042 0.968 sum -11.084 4.449 11.867 16.837 Atomic orbital electron populations 1.21782 0.94322 1.02473 1.01625 1.21532 0.94633 0.95896 0.90523 0.93680 1.22168 0.88411 0.99226 0.96986 1.62222 1.07223 1.54253 1.02959 1.22282 0.97963 0.96245 0.90543 1.21648 0.91103 1.00982 1.00477 1.19072 0.95442 0.95618 0.91458 1.21217 0.92869 1.35198 1.06396 0.92761 1.25026 0.98448 0.95287 0.95724 1.69962 1.35755 1.37402 1.10530 0.86657 0.85667 0.78396 0.77270 1.20271 1.21316 1.20246 1.22189 1.00588 0.95550 0.89163 1.21995 0.87273 0.99534 0.98122 1.60566 1.08809 1.58145 1.04573 0.91892 0.92754 0.91990 0.90652 0.94435 0.91276 0.95295 0.92693 0.93491 0.96818 0.96626 0.93006 0.94424 0.89602 0.94382 0.90555 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.46 37.15 0.35 -0.96 16 2 C 0.08 0.98 3.20 -67.66 -0.22 0.76 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.06 0.84 4.89 -3.77 -0.02 0.82 16 5 N -0.54 -8.74 4.71 -234.47 -1.10 -9.85 16 6 C 0.06 1.04 4.96 -3.82 -0.02 1.02 16 7 C -0.10 -2.24 5.09 -26.73 -0.14 -2.38 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.05 0.80 5.41 -3.77 -0.02 0.78 16 18 C 0.06 0.73 6.72 -3.77 -0.03 0.71 16 19 N -0.69 -7.86 6.55 -106.60 -0.70 -8.55 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.99 6.49 -51.93 -0.34 0.65 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.34 3.12 8.83 -39.29 -0.35 2.77 16 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -30.60 286.15 -8.87 -39.47 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.46 Total: -3.07 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.63 Total: -12.61 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.07 Total: -45.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.60 -8.87 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.765 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds