Wall clock time and date at job start Mon Mar 30 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.49484 * 2 1 4 4 C 1.53054 * 109.49203 * 239.94920 * 2 1 3 5 5 N 1.46955 * 109.36808 * 181.63497 * 4 2 1 6 6 C 1.46901 * 110.99835 * 183.19253 * 5 4 2 7 7 C 1.53000 * 109.46769 * 170.00204 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47116 * 59.99479 * 13 11 9 15 15 H 1.48490 * 109.47381 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46756 * 300.00079 * 13 11 9 17 17 C 1.46958 * 110.87954 * 59.32271 * 5 4 2 18 18 C 1.53046 * 109.36205 * 300.67905 * 17 5 4 19 19 N 1.46955 * 109.36588 * 58.40292 * 18 17 5 20 20 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47244 * 300.04929 * 1 2 3 22 22 H 1.09007 * 109.46875 * 60.04597 * 1 2 3 23 23 H 1.09002 * 109.48344 * 61.66553 * 4 2 1 24 24 H 1.08998 * 109.49062 * 301.60955 * 4 2 1 25 25 H 1.09002 * 109.47401 * 49.99911 * 6 5 4 26 26 H 1.09001 * 109.46874 * 289.99924 * 6 5 4 27 27 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 29 29 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 30 30 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 31 31 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.48699 * 60.64519 * 17 5 4 33 33 H 1.08993 * 109.48441 * 180.71371 * 17 5 4 34 34 H 1.08997 * 109.49681 * 298.43123 * 18 17 5 35 35 H 1.09001 * 109.50181 * 178.37863 * 18 17 5 36 36 H 1.00900 * 111.00421 * 176.80463 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0406 -0.7225 -1.2489 5 7 3.5097 -0.7553 -1.2265 6 6 4.0411 -1.3750 -2.4478 7 6 5.5561 -1.1696 -2.5061 8 6 6.1095 -1.8145 -3.7784 9 6 7.6016 -1.6117 -3.8363 10 1 8.1049 -1.0759 -3.0450 11 6 8.3244 -2.1100 -4.8995 12 7 7.7117 -2.7628 -5.8628 13 14 10.1741 -1.8591 -4.9709 14 1 10.8051 -2.4871 -3.7822 15 1 10.7112 -2.4849 -6.2057 16 1 10.4764 -0.4052 -4.9815 17 6 3.9999 -1.4493 -0.0274 18 6 3.4892 -0.7268 1.2214 19 7 2.0202 -0.6940 1.1990 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5146 0.8895 22 1 -0.3633 0.5132 -0.8905 23 1 1.7022 -0.1927 -2.1393 24 1 1.6543 -1.7416 -1.2630 25 1 3.5780 -0.9141 -3.3203 26 1 3.8191 -2.4422 -2.4398 27 1 5.7780 -0.1024 -2.5141 28 1 6.0191 -1.6304 -1.6337 29 1 5.8876 -2.8817 -3.7709 30 1 5.6464 -1.3532 -4.6507 31 1 8.2202 -3.1136 -6.6106 32 1 3.6358 -2.4766 -0.0276 33 1 5.0898 -1.4493 -0.0275 34 1 3.8755 0.2924 1.2355 35 1 3.8276 -1.2563 2.1120 36 1 1.6551 -0.2684 2.0378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083814835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:08 Heat of formation + Delta-G solvation = -34.524937 kcal Electronic energy + Delta-G solvation = -14245.564123 eV Core-core repulsion = 11955.754084 eV Total energy + Delta-G solvation = -2289.810039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.23385 -36.87955 -35.21653 -33.20178 -32.94386 -28.90068 -28.21543 -25.99007 -24.10870 -23.15016 -21.43097 -20.68410 -18.49587 -17.54599 -16.58857 -16.37594 -16.05717 -15.75376 -15.58354 -14.95631 -14.66880 -14.24772 -13.73475 -13.42334 -13.12106 -12.93450 -12.72264 -12.61298 -12.52739 -12.43985 -12.02860 -11.88639 -11.75776 -11.40745 -11.33887 -11.02898 -10.54892 -9.51968 -9.27560 -8.20222 -6.31640 1.39941 1.43438 1.51435 2.40979 2.90368 3.12754 3.20779 3.86616 3.97889 4.08540 4.24625 4.32582 4.38246 4.40442 4.54941 4.67925 4.70608 4.77799 4.82474 4.90736 4.99638 5.03822 5.06918 5.11071 5.25213 5.35309 5.50453 5.72032 5.84417 5.94731 6.01825 6.17951 6.26239 6.52094 6.84611 7.37593 8.91672 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067354 B = 0.005237 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.616139 B = 5344.783484 C = 5617.211464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.041 0.959 4 C 0.058 3.942 5 N -0.547 5.547 6 C 0.068 3.932 7 C -0.087 4.087 8 C 0.026 3.974 9 C -0.544 4.544 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.050 3.950 18 C 0.067 3.933 19 N -0.692 5.692 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.050 0.950 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.096 0.904 36 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.199 5.383 13.663 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.059 0.941 4 C -0.071 4.071 5 N -0.272 5.272 6 C -0.060 4.060 7 C -0.125 4.125 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.078 4.078 18 C -0.063 4.063 19 N -0.325 5.325 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.071 5.157 13.247 18.650 hybrid contribution 0.916 -0.130 -0.397 1.006 sum -11.156 5.028 12.851 17.745 Atomic orbital electron populations 1.21732 0.92205 1.02601 1.02940 1.21517 0.96215 0.95072 0.89471 0.94093 1.22289 0.86694 0.99292 0.98775 1.62199 1.08873 1.53878 1.02238 1.22014 0.95869 0.96015 0.92087 1.21380 0.93243 1.00022 0.97887 1.18970 0.94947 0.94247 0.93020 1.21650 0.94160 1.35535 1.06864 0.92267 1.26000 1.04010 0.94675 0.95138 1.70098 1.37953 1.38188 1.11195 0.85479 0.78928 0.78823 0.77692 1.19118 1.20710 1.19148 1.22247 1.00104 0.95485 0.89973 1.21927 0.87858 0.99244 0.97251 1.60536 1.08246 1.58478 1.05287 0.92311 0.91005 0.91177 0.90148 0.95161 0.91317 0.96060 0.92984 0.93168 0.99245 0.98958 0.92736 0.95318 0.90621 0.94536 0.88570 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.46 71.98 0.68 -1.47 16 2 C 0.09 1.85 3.20 44.92 0.14 1.99 16 3 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.06 1.53 4.89 86.31 0.42 1.96 16 5 N -0.55 -17.37 4.71 -895.73 -4.22 -21.59 16 6 C 0.07 2.53 4.96 86.30 0.43 2.95 16 7 C -0.09 -3.82 5.09 30.59 0.16 -3.66 16 8 C 0.03 1.41 4.97 29.85 0.15 1.56 16 9 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 13 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 C 0.05 1.46 5.41 86.31 0.47 1.93 16 18 C 0.07 1.50 6.72 86.31 0.58 2.08 16 19 N -0.69 -14.17 6.55 -491.16 -3.21 -17.39 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 26 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.14 6.49 -2.39 -0.02 2.12 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 2.32 6.34 -2.39 -0.02 2.31 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.35 5.48 8.83 -89.69 -0.79 4.69 16 Total: -1.00 -65.34 286.15 -1.17 -66.51 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.23 Total: 7.07 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.72 Total: -23.91 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -7.15 Total: -96.65 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.34 -1.17 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.981 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds