Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.48876 * 2 1 4 4 C 1.53056 * 109.48644 * 120.04281 * 2 1 3 5 5 N 1.46954 * 109.36346 * 178.36713 * 4 2 1 6 6 C 1.46899 * 111.00171 * 176.80801 * 5 4 2 7 7 C 1.52997 * 109.47043 * 189.84851 * 6 5 4 8 8 C 1.52999 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47587 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99896 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00334 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00022 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46990 * 60.00133 * 13 11 9 15 15 H 1.48501 * 109.46953 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47235 * 299.99760 * 13 11 9 17 17 C 1.46953 * 110.88290 * 300.68189 * 5 4 2 18 18 C 1.53056 * 109.36571 * 59.31944 * 17 5 4 19 19 N 1.46956 * 109.48673 * 239.93184 * 2 1 3 20 20 H 1.08993 * 109.46960 * 299.95781 * 1 2 3 21 21 H 1.09002 * 109.46612 * 59.95859 * 1 2 3 22 22 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.48967 * 58.40424 * 4 2 1 24 24 H 1.08996 * 109.50411 * 298.34389 * 4 2 1 25 25 H 1.08998 * 109.47399 * 309.84706 * 6 5 4 26 26 H 1.08997 * 109.46876 * 69.85125 * 6 5 4 27 27 H 1.09000 * 109.47549 * 299.99797 * 7 6 5 28 28 H 1.09000 * 109.47520 * 60.00195 * 7 6 5 29 29 H 1.09004 * 109.46967 * 300.00125 * 8 7 6 30 30 H 1.09004 * 109.47561 * 59.99566 * 8 7 6 31 31 H 0.96995 * 120.00374 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.48869 * 299.34965 * 17 5 4 33 33 H 1.09004 * 109.49286 * 179.28418 * 17 5 4 34 34 H 1.08994 * 109.49121 * 61.56772 * 18 17 5 35 35 H 1.08998 * 109.48697 * 181.63542 * 18 17 5 36 36 H 1.00897 * 110.99884 * 56.84915 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2490 5 7 3.5096 -0.7551 1.2267 6 6 4.0411 -1.3747 2.4480 7 6 5.5566 -1.1724 2.5045 8 6 6.1102 -1.8183 3.7763 9 6 7.6029 -1.6186 3.8324 10 1 8.1064 -1.0848 3.0400 11 6 8.3257 -2.1173 4.8952 12 7 7.7126 -2.7678 5.8600 13 14 10.1760 -1.8704 4.9643 14 1 10.4814 -0.4172 4.9732 15 1 10.7133 -2.4972 6.1987 16 1 10.8043 -2.5011 3.7758 17 6 4.0000 -1.4491 0.0278 18 6 3.4894 -0.7267 -1.2213 19 7 2.0203 -0.6941 -1.1989 20 1 -0.3633 0.5131 0.8903 21 1 -0.3632 0.5145 -0.8897 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6544 -1.7416 1.2631 24 1 1.7022 -0.1928 2.1396 25 1 3.5800 -0.9118 3.3205 26 1 3.8169 -2.4413 2.4414 27 1 6.0178 -1.6353 1.6321 28 1 5.7809 -0.1058 2.5111 29 1 5.6491 -1.3558 4.6490 30 1 5.8860 -2.8850 3.7694 31 1 8.2211 -3.1184 6.6079 32 1 3.6360 -2.4765 0.0280 33 1 5.0900 -1.4491 0.0277 34 1 3.8756 0.2924 -1.2354 35 1 3.8278 -1.2566 -2.1116 36 1 1.6553 -0.2685 -2.0378 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083814836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -12.700999 kcal Electronic energy + Delta-G solvation = -14244.842129 eV Core-core repulsion = 11955.978447 eV Total energy + Delta-G solvation = -2288.863682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10397 -35.46102 -33.29169 -32.22146 -31.08513 -27.45695 -26.91443 -24.39000 -22.83366 -21.61677 -19.75119 -19.62389 -16.63528 -16.13985 -15.12901 -15.03401 -14.65081 -14.35226 -14.31271 -13.72958 -13.27969 -12.52132 -12.26044 -12.15220 -11.91640 -11.56068 -11.30413 -11.06400 -11.01114 -10.77082 -10.71138 -10.44617 -10.37321 -9.56251 -9.28758 -9.03149 -8.55406 -8.30723 -8.01116 -5.96198 -3.98274 3.35977 3.39935 3.42741 4.08763 4.14907 4.49913 4.83781 5.02089 5.15463 5.32506 5.39381 5.41926 5.50263 5.54390 5.64951 5.73749 5.82845 5.90989 5.97961 6.08621 6.12038 6.20639 6.36044 6.74043 6.80213 6.92097 7.16214 7.24583 7.40781 7.47337 7.72066 7.87601 8.04350 8.47752 9.08701 9.65463 11.15288 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067371 B = 0.005238 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.510590 B = 5344.138407 C = 5617.092436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.045 0.955 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.057 3.943 7 C -0.104 4.104 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.053 3.947 18 C 0.060 3.940 19 N -0.689 5.689 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 4.551 -12.261 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.063 0.937 4 C -0.068 4.068 5 N -0.267 5.267 6 C -0.070 4.070 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.075 4.075 18 C -0.069 4.069 19 N -0.321 5.321 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.041 4.312 -11.817 17.413 hybrid contribution 0.956 0.151 -0.043 0.968 sum -11.085 4.463 -11.860 16.836 Atomic orbital electron populations 1.21785 0.94322 1.02473 1.01623 1.21535 0.94633 0.95894 0.90524 0.93680 1.22168 0.88409 0.99227 0.96983 1.62216 1.07224 1.54260 1.02960 1.22279 0.97958 0.96248 0.90545 1.21649 0.91100 1.00979 1.00488 1.19073 0.95441 0.95609 0.91467 1.21216 0.92830 1.35272 1.06362 0.92760 1.25025 0.98446 0.95283 0.95723 1.69957 1.35759 1.37473 1.10464 0.86658 0.85678 0.78391 0.77272 1.20239 1.21316 1.20277 1.22192 1.00591 0.95550 0.89162 1.21999 0.87273 0.99534 0.98124 1.60572 1.08808 1.58135 1.04571 0.91990 0.92754 0.91891 0.94438 0.90651 0.91274 0.95297 0.93494 0.92688 0.96626 0.96820 0.93001 0.94426 0.89598 0.94377 0.90554 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.46 37.16 0.35 -0.96 16 2 C 0.08 0.98 3.20 -67.65 -0.22 0.76 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.06 0.84 4.89 -3.77 -0.02 0.82 16 5 N -0.54 -8.74 4.71 -234.47 -1.10 -9.85 16 6 C 0.06 1.04 4.96 -3.83 -0.02 1.02 16 7 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.05 0.80 5.41 -3.77 -0.02 0.77 16 18 C 0.06 0.73 6.72 -3.76 -0.03 0.71 16 19 N -0.69 -7.86 6.55 -106.58 -0.70 -8.55 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 25 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.05 0.99 6.49 -51.93 -0.34 0.65 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.33 6.33 -51.93 -0.33 1.00 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.34 3.12 8.83 -39.29 -0.35 2.77 16 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -30.60 286.15 -8.87 -39.47 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.46 Total: -3.06 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.63 Total: -12.61 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -1.07 Total: -45.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.60 -8.87 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.772 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds