Wall clock time and date at job start Mon Mar 30 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47456 * 2 1 4 4 C 1.50700 * 109.47181 * 240.00101 * 2 1 3 5 5 H 1.07998 * 120.00195 * 245.55451 * 4 2 1 6 6 C 1.37883 * 120.00001 * 65.54191 * 4 2 1 7 7 N 1.31506 * 119.99959 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46984 * 60.00702 * 8 6 4 10 10 H 1.48503 * 109.46769 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47370 * 300.00299 * 8 6 4 12 12 N 1.46898 * 109.47208 * 120.00118 * 2 1 3 13 13 C 1.46963 * 110.99903 * 72.32307 * 12 2 1 14 14 C 1.53053 * 109.36310 * 183.18767 * 13 12 2 15 15 N 1.46953 * 109.36445 * 301.59814 * 14 13 12 16 16 C 1.46954 * 110.88173 * 59.32334 * 15 14 13 17 17 C 1.46962 * 111.00231 * 196.11868 * 12 2 1 18 18 C 1.53002 * 109.48821 * 296.78172 * 17 12 2 19 19 C 1.53002 * 109.48689 * 56.82212 * 17 12 2 20 20 H 1.09002 * 109.46988 * 294.33680 * 1 2 3 21 21 H 1.09004 * 109.47767 * 174.33220 * 1 2 3 22 22 H 1.09006 * 109.47507 * 54.32659 * 1 2 3 23 23 H 0.96997 * 120.00623 * 180.02562 * 7 6 4 24 24 H 1.08998 * 109.48889 * 303.15629 * 13 12 2 25 25 H 1.08999 * 109.48788 * 63.21849 * 13 12 2 26 26 H 1.08994 * 109.48894 * 181.63121 * 14 13 12 27 27 H 1.09002 * 109.50394 * 61.57430 * 14 13 12 28 28 H 1.00905 * 111.00142 * 183.18893 * 15 14 13 29 29 H 1.09008 * 109.48831 * 180.71535 * 16 15 14 30 30 H 1.08992 * 109.49318 * 60.64239 * 16 15 14 31 31 H 1.09002 * 109.47346 * 59.99802 * 18 17 12 32 32 H 1.09001 * 109.46901 * 179.97438 * 18 17 12 33 33 H 1.09001 * 109.46990 * 299.99696 * 18 17 12 34 34 H 1.09003 * 109.47046 * 52.54794 * 19 17 12 35 35 H 1.08997 * 109.47317 * 172.55252 * 19 17 12 36 36 H 1.09006 * 109.47323 * 292.55571 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5772 -1.6378 -1.1340 6 6 1.7959 -0.1764 -2.4796 7 7 1.1326 0.9530 -2.5971 8 14 2.4180 -1.0574 -4.0048 9 1 1.8150 -2.4126 -4.0742 10 1 2.0371 -0.2832 -5.2135 11 1 3.8968 -1.1762 -3.9393 12 7 2.0196 -0.6925 1.1994 13 6 1.8023 -2.1423 1.0960 14 6 2.2518 -2.8166 2.3944 15 7 3.6699 -2.5153 2.6344 16 6 3.8872 -1.0656 2.7378 17 6 3.4378 -0.3913 1.4394 18 6 4.2762 -0.9190 0.2734 19 6 3.6250 1.1226 1.5586 20 1 -0.3633 0.4235 0.9364 21 1 -0.3635 -1.0226 -0.1015 22 1 -0.3634 0.5993 -0.8349 23 1 0.9660 1.3285 -3.4758 24 1 0.7433 -2.3405 0.9310 25 1 2.3810 -2.5381 0.2614 26 1 2.1186 -3.8950 2.3091 27 1 1.6545 -2.4410 3.2253 28 1 4.0063 -2.9910 3.4582 29 1 4.9463 -0.8674 2.9027 30 1 3.3085 -0.6697 3.5723 31 1 3.9546 -0.4400 -0.6514 32 1 5.3279 -0.6950 0.4515 33 1 4.1432 -1.9976 0.1892 34 1 2.9307 1.5172 2.3005 35 1 4.6478 1.3391 1.8667 36 1 3.4296 1.5900 0.5934 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083842715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:25 Heat of formation + Delta-G solvation = 16.203202 kcal Electronic energy + Delta-G solvation = -15775.525844 eV Core-core repulsion = 13487.915542 eV Total energy + Delta-G solvation = -2287.610302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.23682 -34.81953 -32.85480 -31.80323 -28.96258 -26.74648 -26.44645 -24.93988 -24.08741 -21.20850 -20.00547 -17.50558 -16.16900 -15.94057 -14.85326 -14.70198 -14.08703 -13.65999 -13.28802 -13.04936 -12.63019 -12.16853 -11.48935 -11.38989 -11.23229 -11.12591 -10.79697 -10.73710 -10.63400 -10.59902 -10.42234 -10.19784 -9.86448 -9.59026 -9.30230 -8.76650 -8.31667 -8.02053 -7.02280 -5.95964 -4.00795 3.31344 3.36310 3.39711 4.43991 4.65780 5.04580 5.30581 5.51491 5.68497 5.78806 5.91293 6.02353 6.08116 6.17587 6.24823 6.44422 6.56000 6.69820 6.80809 6.83644 6.90781 6.99265 7.07793 7.19380 7.29297 7.40873 7.57083 7.64491 7.73383 7.78772 8.03423 8.24238 8.40171 8.54803 9.05006 9.60600 11.06618 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.011818 C = 0.011511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.149236 B = 2368.604422 C = 2431.894804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.200 3.800 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.882 3.118 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.530 5.530 13 C 0.059 3.941 14 C 0.058 3.942 15 N -0.687 5.687 16 C 0.072 3.928 17 C 0.117 3.883 18 C -0.175 4.175 19 C -0.136 4.136 20 H 0.014 0.986 21 H 0.025 0.975 22 H 0.070 0.930 23 H 0.260 0.740 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.027 0.973 28 H 0.330 0.670 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.023 0.977 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -3.406 8.015 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.094 3.906 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.086 0.914 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.710 3.290 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.254 5.254 13 C -0.069 4.069 14 C -0.071 4.071 15 N -0.317 5.317 16 C -0.058 4.058 17 C 0.027 3.973 18 C -0.233 4.233 19 C -0.194 4.194 20 H 0.033 0.967 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.232 -3.114 7.610 8.835 hybrid contribution 0.386 -0.647 -0.733 1.051 sum 3.619 -3.762 6.877 8.634 Atomic orbital electron populations 1.21695 0.98248 0.99338 0.98809 1.19373 0.91829 0.94917 0.84496 0.93280 1.21879 1.35137 1.08820 0.91586 0.91435 1.24909 0.95154 0.94890 0.98711 1.69905 1.40344 1.18836 1.23621 0.86810 0.79387 0.79842 0.82914 1.20388 1.21426 1.20295 1.62806 1.14598 1.07419 1.40599 1.22015 1.00225 0.89632 0.95048 1.22088 0.87706 0.98998 0.98332 1.60470 1.18766 1.09366 1.43094 1.22043 0.99222 0.87329 0.97193 1.20783 0.89422 0.93942 0.93203 1.22788 0.96943 1.02072 1.01522 1.21847 0.99625 0.95305 1.02590 0.96703 0.95570 0.91114 0.92995 0.91428 0.92679 0.91680 0.95481 0.85419 0.91694 0.95453 0.88191 0.95787 0.92585 0.92997 0.93728 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 8.90 37.15 0.33 -2.62 16 2 C 0.20 4.87 1.93 -68.87 -0.13 4.74 16 3 H 0.05 1.31 5.64 -51.93 -0.29 1.01 16 4 C -0.54 -13.87 4.96 -34.44 -0.17 -14.04 16 5 H 0.07 1.76 4.34 -52.49 -0.23 1.54 16 6 C 0.07 1.76 5.33 -17.82 -0.10 1.66 16 7 N -0.89 -24.84 11.79 55.43 0.65 -24.18 16 8 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.27 4.43 -212.31 -0.94 -12.21 16 13 C 0.06 1.19 4.59 -3.76 -0.02 1.18 16 14 C 0.06 0.96 6.72 -3.77 -0.03 0.94 16 15 N -0.69 -10.88 6.22 -113.64 -0.71 -11.59 16 16 C 0.07 1.19 5.43 -3.77 -0.02 1.17 16 17 C 0.12 2.27 0.68 -131.54 -0.09 2.18 16 18 C -0.18 -3.63 6.72 37.16 0.25 -3.38 16 19 C -0.14 -2.50 7.97 37.16 0.30 -2.21 16 20 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 21 H 0.03 0.61 6.95 -51.93 -0.36 0.25 16 22 H 0.07 1.85 6.66 -51.93 -0.35 1.50 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.07 1.38 6.73 -51.93 -0.35 1.03 16 25 H 0.06 1.22 4.46 -51.93 -0.23 0.99 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.33 4.29 8.90 -39.29 -0.35 3.94 16 29 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 2.38 5.12 -51.93 -0.27 2.12 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.20 5.71 -51.93 -0.30 0.91 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.44 6.45 -51.93 -0.33 1.10 16 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -27.07 260.94 -7.33 -34.40 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.57 Total: 3.98 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.32 Total: -10.39 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.99 Total: -47.98 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.07 -7.33 -34.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083842715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.602 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds