Wall clock time and date at job start Mon Mar 30 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46912 * 2 1 4 4 C 1.48561 * 110.99984 * 76.01781 * 3 2 1 5 5 C 1.54380 * 104.59350 * 159.03997 * 4 3 2 6 6 C 1.54266 * 105.05905 * 336.14695 * 5 4 3 7 7 C 1.48566 * 110.99753 * 191.43708 * 3 2 1 8 8 H 1.08995 * 110.50675 * 319.78670 * 7 3 2 9 9 C 1.53001 * 110.40948 * 82.18209 * 7 3 2 10 10 N 1.46507 * 109.46639 * 178.52326 * 9 7 3 11 11 C 1.46497 * 119.99593 * 267.71110 * 10 9 7 12 12 C 1.36929 * 120.00336 * 87.71437 * 10 9 7 13 13 H 1.08002 * 120.00022 * 20.02400 * 12 10 9 14 14 C 1.38810 * 120.00401 * 200.02720 * 12 10 9 15 15 N 1.31621 * 119.99869 * 18.60555 * 14 12 10 16 16 Si 1.86795 * 120.00244 * 198.60868 * 14 12 10 17 17 H 1.48499 * 109.47109 * 94.98809 * 16 14 12 18 18 H 1.48499 * 109.47092 * 214.98612 * 16 14 12 19 19 H 1.48495 * 109.47147 * 334.98345 * 16 14 12 20 20 H 1.08993 * 109.47382 * 59.99678 * 1 2 3 21 21 H 1.08995 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46458 * 299.99856 * 1 2 3 23 23 H 1.09002 * 109.46896 * 240.00451 * 2 1 3 24 24 H 1.08997 * 109.47127 * 119.99886 * 2 1 3 25 25 H 1.08997 * 110.41402 * 40.26214 * 4 3 2 26 26 H 1.08995 * 110.40789 * 277.81484 * 4 3 2 27 27 H 1.08999 * 110.32613 * 95.04115 * 5 4 3 28 28 H 1.08998 * 110.32402 * 217.14874 * 5 4 3 29 29 H 1.09001 * 110.32228 * 118.89853 * 6 5 4 30 30 H 1.09006 * 110.32115 * 241.00230 * 6 5 4 31 31 H 1.08994 * 109.46928 * 298.51372 * 9 7 3 32 32 H 1.08992 * 109.47401 * 58.52202 * 9 7 3 33 33 H 1.09006 * 109.47429 * 95.52917 * 11 10 9 34 34 H 1.09006 * 109.47277 * 215.52542 * 11 10 9 35 35 H 1.08997 * 109.47613 * 335.52956 * 11 10 9 36 36 H 0.96999 * 120.00435 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8812 1.9986 1.3458 5 6 2.8819 3.1742 1.3422 6 6 3.9329 2.8026 0.2759 7 6 3.4789 1.4338 -0.2750 8 1 3.9927 0.6253 0.2449 9 6 3.7412 1.3507 -1.7801 10 7 5.1823 1.4360 -2.0299 11 6 5.8048 2.7364 -2.2899 12 6 5.9472 0.3003 -2.0205 13 1 5.4821 -0.6652 -2.1540 14 6 7.3205 0.3899 -1.8394 15 7 7.8462 1.4795 -1.3209 16 14 8.4226 -1.0358 -2.3315 17 1 8.9452 -0.8071 -3.7025 18 1 9.5577 -1.1356 -1.3793 19 1 7.6409 -2.2981 -2.3038 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 2.1435 1.2785 2.1208 26 1 0.8653 2.3647 1.4939 27 1 2.3767 4.1006 1.0690 28 1 3.3519 3.2743 2.3205 29 1 3.9435 3.5467 -0.5206 30 1 4.9204 2.7209 0.7300 31 1 3.3615 0.4036 -2.1633 32 1 3.2358 2.1750 -2.2831 33 1 6.2140 3.1354 -1.3617 34 1 6.6068 2.6162 -3.0184 35 1 5.0571 3.4252 -2.6830 36 1 8.8059 1.5424 -1.1947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086188609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:55 Heat of formation + Delta-G solvation = 20.972148 kcal Electronic energy + Delta-G solvation = -14995.861908 eV Core-core repulsion = 12708.458403 eV Total energy + Delta-G solvation = -2287.403505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.74137 -35.31785 -32.97991 -31.41655 -29.09479 -28.18229 -25.95533 -24.81600 -22.50238 -21.09920 -20.14017 -19.34836 -16.55332 -15.57759 -15.23257 -14.61975 -14.33392 -13.67669 -13.50344 -13.05927 -12.68132 -12.49407 -12.11480 -11.81687 -11.43934 -11.18714 -11.05808 -10.77759 -10.75931 -10.53667 -10.43792 -10.40704 -9.98782 -9.92628 -9.77134 -9.68025 -8.48196 -8.04249 -6.72352 -5.68952 -3.10111 3.40775 3.47812 3.48812 4.35488 4.58660 5.12239 5.16077 5.36978 5.42951 5.48841 5.62726 5.69674 5.81603 5.85551 5.89637 6.01494 6.12342 6.19495 6.27151 6.29637 6.40400 6.56681 6.69914 6.77805 6.79634 6.86575 6.96253 7.38798 7.44815 7.55804 7.76779 7.85621 8.43983 9.28234 9.93838 10.42420 11.36142 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.008831 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.542692 B = 3169.778423 C = 3542.218379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 N -0.511 5.511 4 C 0.035 3.965 5 C -0.126 4.126 6 C -0.103 4.103 7 C 0.045 3.955 8 H 0.050 0.950 9 C 0.169 3.831 10 N -0.598 5.598 11 C 0.162 3.838 12 C -0.252 4.252 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.899 3.101 17 H -0.289 1.289 18 H -0.293 1.293 19 H -0.280 1.280 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.031 0.969 34 H 0.037 0.963 35 H -0.001 1.001 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 0.955 3.769 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 N -0.236 5.236 4 C -0.094 4.094 5 C -0.165 4.165 6 C -0.141 4.141 7 C -0.065 4.065 8 H 0.068 0.932 9 C 0.041 3.959 10 N -0.321 5.321 11 C 0.017 3.983 12 C -0.382 4.382 13 H 0.085 0.915 14 C -0.198 4.198 15 N -0.549 5.549 16 Si 0.730 3.270 17 H -0.216 1.216 18 H -0.219 1.219 19 H -0.206 1.206 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.031 1.271 3.370 11.604 hybrid contribution 1.220 -1.271 0.593 1.859 sum -9.811 0.000 3.963 10.581 Atomic orbital electron populations 1.21712 0.95442 1.00767 1.02001 1.22206 0.95573 0.90230 1.00911 1.65412 1.16952 1.16378 1.24843 1.23060 0.99255 0.96315 0.90750 1.22335 0.96948 0.97882 0.99297 1.22153 0.97839 0.96769 0.97364 1.23510 0.85156 0.96957 1.00873 0.93198 1.20680 0.85531 0.98872 0.90809 1.43990 1.02288 1.04592 1.81226 1.20812 0.93744 0.84639 0.99064 1.19206 0.89161 0.86699 1.43105 0.91480 1.24908 0.97627 0.97277 0.99983 1.70103 1.10875 1.27921 1.46002 0.86306 0.80546 0.82104 0.78050 1.21593 1.21949 1.20553 0.92065 0.92938 0.93286 0.90692 0.95187 0.94621 0.91118 0.91803 0.92195 0.91584 0.91226 0.94326 0.93637 0.95046 0.94397 0.98199 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 10.04 37.16 0.37 -1.35 16 2 C 0.04 0.59 5.51 -3.82 -0.02 0.57 16 3 N -0.51 -8.54 5.01 -222.14 -1.11 -9.65 16 4 C 0.03 0.51 5.97 -2.18 -0.01 0.50 16 5 C -0.13 -1.93 7.00 -25.35 -0.18 -2.11 16 6 C -0.10 -1.95 5.56 -25.35 -0.14 -2.09 16 7 C 0.05 0.90 2.54 -66.07 -0.17 0.73 16 8 H 0.05 1.12 8.00 -51.93 -0.42 0.71 16 9 C 0.17 3.64 5.30 -4.04 -0.02 3.62 16 10 N -0.60 -15.24 2.78 -181.12 -0.50 -15.74 16 11 C 0.16 4.03 7.73 59.85 0.46 4.50 16 12 C -0.25 -7.01 9.66 -15.06 -0.15 -7.15 16 13 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 14 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 15 N -0.90 -26.45 10.87 55.49 0.60 -25.84 16 16 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.57 7.54 -51.93 -0.39 0.17 16 23 H 0.07 1.19 7.15 -51.93 -0.37 0.82 16 24 H 0.03 0.45 7.73 -51.93 -0.40 0.05 16 25 H 0.04 0.53 7.73 -51.93 -0.40 0.13 16 26 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.28 7.16 -51.93 -0.37 0.91 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.04 0.83 7.21 -51.93 -0.37 0.45 16 32 H 0.05 0.94 7.80 -51.93 -0.41 0.54 16 33 H 0.03 0.83 7.18 -51.93 -0.37 0.46 16 34 H 0.04 1.01 7.32 -51.93 -0.38 0.63 16 35 H 0.00 -0.01 7.81 -51.93 -0.41 -0.42 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -28.95 281.30 -8.11 -37.05 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -6.36 Total: -4.29 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.06 Total: -2.85 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -1.01 Total: -51.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.95 -8.11 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086188609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.025 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds