Wall clock time and date at job start Mon Mar 30 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46912 * 2 1 4 4 C 1.48561 * 110.99984 * 76.01781 * 3 2 1 5 5 C 1.54380 * 104.59350 * 159.03997 * 4 3 2 6 6 C 1.54266 * 105.05905 * 336.14695 * 5 4 3 7 7 C 1.48566 * 110.99753 * 191.43708 * 3 2 1 8 8 H 1.08995 * 110.50675 * 319.78670 * 7 3 2 9 9 C 1.53001 * 110.40948 * 82.18209 * 7 3 2 10 10 N 1.46507 * 109.46639 * 178.52326 * 9 7 3 11 11 C 1.46497 * 119.99593 * 267.71110 * 10 9 7 12 12 C 1.36929 * 120.00336 * 87.71437 * 10 9 7 13 13 H 1.08002 * 120.00022 * 20.02400 * 12 10 9 14 14 C 1.38810 * 120.00401 * 200.02720 * 12 10 9 15 15 N 1.31621 * 119.99869 * 18.60555 * 14 12 10 16 16 Si 1.86795 * 120.00244 * 198.60868 * 14 12 10 17 17 H 1.48499 * 109.47109 * 94.98809 * 16 14 12 18 18 H 1.48499 * 109.47092 * 214.98612 * 16 14 12 19 19 H 1.48495 * 109.47147 * 334.98345 * 16 14 12 20 20 H 1.08993 * 109.47382 * 59.99678 * 1 2 3 21 21 H 1.08995 * 109.46921 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46458 * 299.99856 * 1 2 3 23 23 H 1.09002 * 109.46896 * 240.00451 * 2 1 3 24 24 H 1.08997 * 109.47127 * 119.99886 * 2 1 3 25 25 H 1.08997 * 110.41402 * 40.26214 * 4 3 2 26 26 H 1.08995 * 110.40789 * 277.81484 * 4 3 2 27 27 H 1.08999 * 110.32613 * 95.04115 * 5 4 3 28 28 H 1.08998 * 110.32402 * 217.14874 * 5 4 3 29 29 H 1.09001 * 110.32228 * 118.89853 * 6 5 4 30 30 H 1.09006 * 110.32115 * 241.00230 * 6 5 4 31 31 H 1.08994 * 109.46928 * 298.51372 * 9 7 3 32 32 H 1.08992 * 109.47401 * 58.52202 * 9 7 3 33 33 H 1.09006 * 109.47429 * 95.52917 * 11 10 9 34 34 H 1.09006 * 109.47277 * 215.52542 * 11 10 9 35 35 H 1.08997 * 109.47613 * 335.52956 * 11 10 9 36 36 H 0.96999 * 120.00435 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8812 1.9986 1.3458 5 6 2.8819 3.1742 1.3422 6 6 3.9329 2.8026 0.2759 7 6 3.4789 1.4338 -0.2750 8 1 3.9927 0.6253 0.2449 9 6 3.7412 1.3507 -1.7801 10 7 5.1823 1.4360 -2.0299 11 6 5.8048 2.7364 -2.2899 12 6 5.9472 0.3003 -2.0205 13 1 5.4821 -0.6652 -2.1540 14 6 7.3205 0.3899 -1.8394 15 7 7.8462 1.4795 -1.3209 16 14 8.4226 -1.0358 -2.3315 17 1 8.9452 -0.8071 -3.7025 18 1 9.5577 -1.1356 -1.3793 19 1 7.6409 -2.2981 -2.3038 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 2.1435 1.2785 2.1208 26 1 0.8653 2.3647 1.4939 27 1 2.3767 4.1006 1.0690 28 1 3.3519 3.2743 2.3205 29 1 3.9435 3.5467 -0.5206 30 1 4.9204 2.7209 0.7300 31 1 3.3615 0.4036 -2.1633 32 1 3.2358 2.1750 -2.2831 33 1 6.2140 3.1354 -1.3617 34 1 6.6068 2.6162 -3.0184 35 1 5.0571 3.4252 -2.6830 36 1 8.8059 1.5424 -1.1947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086188609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:55 Heat of formation + Delta-G solvation = 2.956221 kcal Electronic energy + Delta-G solvation = -14996.643137 eV Core-core repulsion = 12708.458403 eV Total energy + Delta-G solvation = -2288.184734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17330 -37.23340 -34.27807 -33.38131 -30.69353 -29.49914 -27.98984 -26.58646 -23.76832 -22.96048 -21.40522 -20.97340 -18.65246 -17.00163 -16.87450 -16.32558 -15.73382 -15.40397 -15.19025 -14.51603 -14.40367 -14.01948 -13.55217 -13.25598 -13.17229 -12.80740 -12.57704 -12.49259 -12.29419 -12.18720 -12.07100 -11.95748 -11.79723 -11.62836 -11.43899 -11.30575 -10.61289 -9.42788 -8.80747 -7.83558 -5.27314 1.44478 1.46350 1.54869 2.50123 3.02121 3.30067 3.74384 3.85350 3.95665 4.11529 4.26950 4.32570 4.48153 4.59317 4.67052 4.68327 4.80605 4.85751 4.87557 5.02878 5.07489 5.09369 5.15262 5.17778 5.27974 5.33691 5.36346 5.44414 5.62188 5.71616 6.01014 6.19365 6.33931 7.14896 7.88267 8.31679 9.19858 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.008831 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.542692 B = 3169.778423 C = 3542.218379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 N -0.509 5.509 4 C 0.036 3.964 5 C -0.119 4.119 6 C -0.101 4.101 7 C 0.055 3.945 8 H 0.014 0.986 9 C 0.171 3.829 10 N -0.612 5.612 11 C 0.178 3.822 12 C -0.262 4.262 13 H 0.066 0.934 14 C -0.051 4.051 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.287 1.287 18 H -0.295 1.295 19 H -0.270 1.270 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.010 0.990 34 H 0.011 0.989 35 H 0.030 0.970 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 0.779 4.100 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 N -0.234 5.234 4 C -0.092 4.092 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.056 4.056 8 H 0.032 0.968 9 C 0.044 3.956 10 N -0.335 5.335 11 C 0.033 3.967 12 C -0.392 4.392 13 H 0.084 0.916 14 C -0.247 4.247 15 N -0.579 5.579 16 Si 0.792 3.208 17 H -0.214 1.214 18 H -0.222 1.222 19 H -0.195 1.195 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.904 1.086 3.704 13.469 hybrid contribution 1.720 -1.215 0.492 2.162 sum -11.185 -0.129 4.195 11.946 Atomic orbital electron populations 1.21640 0.92650 1.02160 1.02475 1.22298 0.97767 0.89088 1.00130 1.65406 1.14024 1.17590 1.26420 1.23160 1.00643 0.95912 0.89493 1.22324 0.95920 0.98917 0.98500 1.22045 0.97441 0.96185 0.98269 1.23145 0.87284 0.96244 0.98928 0.96755 1.20727 0.83450 0.99189 0.92214 1.44175 1.03632 1.04157 1.81578 1.20566 0.93753 0.85040 0.97358 1.19465 0.89792 0.87438 1.42517 0.91645 1.25648 0.98855 0.99824 1.00361 1.70252 1.10720 1.29734 1.47171 0.85305 0.78529 0.79645 0.77336 1.21372 1.22209 1.19478 0.92112 0.91188 0.92186 0.92106 0.95481 0.94545 0.88277 0.89825 0.91036 0.92129 0.94552 0.94541 0.92396 0.97182 0.96979 0.95178 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 10.04 71.98 0.72 -2.08 16 2 C 0.04 1.02 5.51 86.31 0.48 1.49 16 3 N -0.51 -16.15 5.01 -856.71 -4.29 -20.44 16 4 C 0.04 0.96 5.97 86.45 0.52 1.48 16 5 C -0.12 -3.35 7.00 31.49 0.22 -3.13 16 6 C -0.10 -3.81 5.56 31.49 0.18 -3.63 16 7 C 0.05 2.17 2.54 45.06 0.11 2.28 16 8 H 0.01 0.66 8.00 -2.39 -0.02 0.65 16 9 C 0.17 7.35 5.30 86.38 0.46 7.81 16 10 N -0.61 -31.59 2.78 -726.94 -2.02 -33.61 16 11 C 0.18 8.98 7.73 127.77 0.99 9.97 16 12 C -0.26 -14.76 9.66 84.03 0.81 -13.95 16 13 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 14 C -0.05 -2.94 4.99 84.86 0.42 -2.52 16 15 N -0.93 -55.85 10.87 21.65 0.24 -55.61 16 16 Si 0.96 45.97 29.59 68.60 2.03 48.00 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.16 7.54 -2.39 -0.02 1.14 16 23 H 0.06 1.89 7.15 -2.39 -0.02 1.87 16 24 H 0.03 0.78 7.73 -2.39 -0.02 0.77 16 25 H 0.04 0.99 7.73 -2.39 -0.02 0.97 16 26 H 0.10 2.18 7.88 -2.39 -0.02 2.16 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 2.32 7.16 -2.39 -0.02 2.30 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.04 1.56 7.21 -2.39 -0.02 1.55 16 32 H 0.06 2.33 7.80 -2.39 -0.02 2.32 16 33 H 0.01 0.54 7.18 -2.38 -0.02 0.53 16 34 H 0.01 0.63 7.32 -2.38 -0.02 0.62 16 35 H 0.03 1.30 7.81 -2.39 -0.02 1.28 16 36 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -62.29 281.30 1.87 -60.42 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.01 Total: 3.53 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 4.90 Total: -2.30 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -6.08 Total: -109.66 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -62.29 1.87 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086188609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.376 kcal (2) G-P(sol) polarization free energy of solvation -62.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds