Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 H 1.08993 * 109.90689 * 53.90074 * 5 4 2 7 7 C 1.54002 * 109.91302 * 175.00253 * 5 4 2 8 8 C 1.54595 * 105.13861 * 120.58060 * 7 5 4 9 9 C 1.54933 * 102.92294 * 21.95354 * 8 7 5 10 10 N 1.47900 * 109.91910 * 292.58948 * 5 4 2 11 11 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 12 12 C 1.46901 * 110.99793 * 85.00144 * 11 2 1 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 2 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 25 25 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 26 26 H 1.08998 * 110.30904 * 239.49322 * 7 5 4 27 27 H 1.08995 * 110.31063 * 1.66145 * 7 5 4 28 28 H 1.09000 * 110.72330 * 140.31322 * 8 7 5 29 29 H 1.08997 * 110.72457 * 263.42056 * 8 7 5 30 30 H 1.09008 * 110.66940 * 81.02143 * 9 8 7 31 31 H 1.09005 * 110.66769 * 204.14872 * 9 8 7 32 32 H 1.00895 * 110.99901 * 335.83349 * 10 5 4 33 33 H 1.00899 * 110.99995 * 321.04542 * 11 2 1 34 34 H 1.09002 * 109.47401 * 59.99808 * 12 11 2 35 35 H 1.09001 * 109.46874 * 299.99821 * 12 11 2 36 36 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.8659 0.4323 1.2485 7 6 4.0790 -1.2264 2.6294 8 6 5.0320 -2.3650 2.1989 9 6 5.4276 -1.9592 0.7570 10 7 4.1718 -1.3863 0.2084 11 7 2.0196 -0.6925 -1.1995 12 6 2.0824 0.2226 -2.3469 13 6 2.5884 -0.5216 -3.5558 14 1 2.8379 -1.5695 -3.4794 15 6 2.7318 0.1353 -4.7595 16 7 2.4274 1.4113 -4.8526 17 14 3.3583 -0.7872 -6.2581 18 1 2.2094 -1.3702 -6.9965 19 1 4.0927 0.1503 -7.1453 20 1 4.2709 -1.8751 -5.8238 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.6204 -0.4787 3.2090 27 1 3.2483 -1.6275 3.2099 28 1 5.9095 -2.3984 2.8447 29 1 4.5142 -3.3241 2.2042 30 1 6.2184 -1.2090 0.7716 31 1 5.7352 -2.8328 0.1821 32 1 3.5496 -2.1151 -0.1074 33 1 1.4495 -1.4980 -1.4100 34 1 2.7588 1.0462 -2.1183 35 1 1.0870 0.6163 -2.5525 36 1 2.5286 1.8735 -5.6994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086495191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -8.977785 kcal Electronic energy + Delta-G solvation = -14650.150874 eV Core-core repulsion = 12361.448642 eV Total energy + Delta-G solvation = -2288.702232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.65173 -36.05023 -32.84340 -30.83255 -29.47107 -28.91651 -25.81213 -24.93626 -21.79334 -21.02358 -20.12480 -19.80688 -16.30035 -15.55289 -15.11969 -14.79809 -14.35087 -13.76787 -13.40451 -13.21832 -13.14746 -12.32362 -11.92565 -11.86393 -11.64334 -11.27626 -11.21252 -11.07152 -10.77462 -10.62611 -10.53079 -10.45999 -10.18974 -10.10967 -9.68117 -9.01639 -8.35909 -7.78589 -6.99568 -5.90889 -3.90538 3.38583 3.44621 3.49703 4.53069 4.64850 4.97409 4.98839 5.21279 5.32546 5.45394 5.49846 5.61619 5.74568 5.76282 5.85861 5.91627 5.96641 6.01292 6.09377 6.18564 6.21079 6.36953 6.42409 6.51500 6.61627 6.77536 7.44325 7.49943 7.61011 7.93320 8.17851 8.29826 8.59946 8.80041 9.19047 9.73092 11.20511 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.008183 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.358154 B = 3420.775868 C = 4090.919941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.109 4.109 5 C 0.086 3.914 6 H 0.075 0.925 7 C -0.151 4.151 8 C -0.159 4.159 9 C 0.037 3.963 10 N -0.629 5.629 11 N -0.663 5.663 12 C 0.201 3.799 13 C -0.501 4.501 14 H 0.061 0.939 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.896 3.104 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.320 0.680 34 H 0.027 0.973 35 H -0.020 1.020 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -5.549 13.490 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.024 4.024 6 H 0.093 0.907 7 C -0.191 4.191 8 C -0.198 4.198 9 C -0.094 4.094 10 N -0.258 5.258 11 N -0.292 5.292 12 C 0.075 3.925 13 C -0.540 4.540 14 H 0.079 0.921 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.724 3.276 18 H -0.210 1.210 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.045 0.955 35 H -0.002 1.002 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.775 -4.745 13.112 14.057 hybrid contribution -0.980 -0.934 -0.399 1.412 sum 0.795 -5.679 12.713 13.946 Atomic orbital electron populations 1.22537 0.98835 1.01157 1.01416 1.21486 0.91018 0.98207 0.92007 0.91219 1.21921 0.94971 1.00387 0.97488 1.22217 0.93394 0.98988 0.87834 0.90735 1.22970 0.98902 0.97960 0.99250 1.23145 0.99132 0.98273 0.99269 1.23184 0.95664 0.98582 0.91937 1.62738 1.05115 1.27176 1.30792 1.60709 1.54219 1.09906 1.04396 1.19474 0.94603 0.91850 0.86619 1.21188 1.42520 0.96803 0.93478 0.92103 1.24970 0.95972 0.94885 0.98931 1.69967 1.49589 1.08998 1.25624 0.86537 0.78796 0.79571 0.82687 1.21004 1.21438 1.19850 0.93491 0.92475 0.93241 0.92355 0.92547 0.92024 0.92049 0.91918 0.92140 0.91070 0.91480 0.83303 0.86378 0.95536 1.00228 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.16 37.16 0.34 -2.49 16 2 C 0.08 1.46 2.59 -67.71 -0.18 1.28 16 3 H 0.07 1.34 7.80 -51.93 -0.40 0.93 16 4 C -0.11 -1.55 4.16 -26.73 -0.11 -1.66 16 5 C 0.09 1.29 3.38 -66.64 -0.23 1.06 16 6 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.15 -1.85 6.57 -25.37 -0.17 -2.02 16 8 C -0.16 -1.88 7.06 -24.87 -0.18 -2.05 16 9 C 0.04 0.52 7.55 -1.90 -0.01 0.50 16 10 N -0.63 -10.56 6.23 -103.13 -0.64 -11.20 16 11 N -0.66 -13.68 3.95 -107.99 -0.43 -14.11 16 12 C 0.20 5.29 5.24 -4.97 -0.03 5.26 16 13 C -0.50 -14.32 9.32 -34.44 -0.32 -14.64 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 17 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 23 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.35 5.93 7.32 -39.29 -0.29 5.64 16 33 H 0.32 6.40 8.46 -39.29 -0.33 6.07 16 34 H 0.03 0.77 8.06 -51.93 -0.42 0.36 16 35 H -0.02 -0.56 7.44 -51.93 -0.39 -0.95 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -29.79 286.41 -8.39 -38.18 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.38 Total: 5.78 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.97 Total: -13.32 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.33 Total: -52.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.79 -8.39 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086495191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.205 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds