Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09008 * 109.90548 * 54.29949 * 5 4 2 7 7 C 1.53991 * 109.91787 * 175.40409 * 5 4 2 8 8 C 1.54599 * 105.13957 * 120.58139 * 7 5 4 9 9 C 1.54940 * 102.92249 * 21.95528 * 8 7 5 10 10 N 1.47900 * 109.91899 * 293.19913 * 5 4 2 11 11 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 12 12 C 1.46900 * 110.99981 * 274.99476 * 11 2 1 13 13 C 1.50705 * 109.47101 * 180.02562 * 12 11 2 14 14 H 1.07997 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99964 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47002 * 60.00268 * 17 15 13 19 19 H 1.48498 * 109.47112 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.46934 * 300.00251 * 17 15 13 21 21 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 25 25 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 26 26 H 1.09005 * 110.30956 * 239.49292 * 7 5 4 27 27 H 1.08996 * 110.31192 * 1.56118 * 7 5 4 28 28 H 1.08999 * 110.72877 * 140.31690 * 8 7 5 29 29 H 1.09001 * 110.72233 * 263.41795 * 8 7 5 30 30 H 1.08995 * 110.66549 * 81.02656 * 9 8 7 31 31 H 1.08998 * 110.66235 * 204.15275 * 9 8 7 32 32 H 1.00903 * 111.00053 * 335.82832 * 10 5 4 33 33 H 1.00900 * 111.00332 * 38.95526 * 11 2 1 34 34 H 1.08996 * 109.47628 * 300.00315 * 12 11 2 35 35 H 1.09001 * 109.46729 * 60.00435 * 12 11 2 36 36 H 0.97001 * 120.00066 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 4.0023 -0.9792 -0.3848 7 6 4.0988 -1.4323 -2.5035 8 6 4.8431 -0.4116 -3.3947 9 6 5.1668 0.7384 -2.4081 10 7 3.9613 0.7938 -1.5376 11 7 2.0196 -0.6926 1.1994 12 6 2.0825 0.2225 2.3469 13 6 2.5886 -0.5217 3.5557 14 1 2.8388 -1.5695 3.4791 15 6 2.7320 0.1351 4.7594 16 7 2.4268 1.4109 4.8529 17 14 3.3599 -0.7872 6.2577 18 1 4.7165 -1.3221 5.9770 19 1 3.4234 0.1378 7.4176 20 1 2.4397 -1.9102 6.5691 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7515 -1.7715 -1.2057 25 1 1.6053 -0.2617 -2.1370 26 1 4.7869 -2.2022 -2.1544 27 1 3.2729 -1.8847 -3.0525 28 1 5.7592 -0.8453 -3.7955 29 1 4.1987 -0.0616 -4.2012 30 1 6.0529 0.5020 -1.8192 31 1 5.2991 1.6786 -2.9435 32 1 3.2186 1.3125 -1.9821 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0461 2.1183 35 1 1.0871 0.6162 2.5525 36 1 2.5273 1.8729 5.6999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086495194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = -15.882626 kcal Electronic energy + Delta-G solvation = -14453.633341 eV Core-core repulsion = 12164.631693 eV Total energy + Delta-G solvation = -2289.001648 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76711 -36.14522 -32.87704 -30.85923 -29.73383 -28.98416 -25.87168 -24.99478 -21.72247 -21.49255 -20.04088 -19.80959 -16.38757 -15.70957 -15.24800 -14.91852 -14.35183 -13.77507 -13.59905 -13.44167 -13.11052 -12.37530 -11.98957 -11.84148 -11.66122 -11.46824 -11.28155 -11.15942 -10.96132 -10.70187 -10.59068 -10.30994 -10.25751 -10.10972 -9.72068 -9.07021 -8.39605 -8.25915 -7.11551 -5.94319 -3.95582 3.38486 3.42150 3.45387 4.44297 4.50190 4.88750 4.91095 5.15501 5.27578 5.31458 5.41360 5.55980 5.66339 5.69508 5.78456 5.86012 5.91208 5.98100 6.03860 6.10353 6.15687 6.30589 6.37746 6.61045 6.72866 6.84999 7.13420 7.42471 7.58520 7.67894 7.88361 8.25433 8.54459 8.75636 9.13996 9.68645 11.16723 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.006924 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.162618 B = 4042.825312 C = 4399.043287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.078 0.922 4 C -0.106 4.106 5 C 0.080 3.920 6 H 0.106 0.894 7 C -0.150 4.150 8 C -0.158 4.158 9 C 0.041 3.959 10 N -0.661 5.661 11 N -0.679 5.679 12 C 0.197 3.803 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.329 0.671 33 H 0.324 0.676 34 H 0.030 0.970 35 H -0.017 1.017 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -3.109 -15.008 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 H 0.096 0.904 4 C -0.144 4.144 5 C -0.030 4.030 6 H 0.124 0.876 7 C -0.189 4.189 8 C -0.197 4.197 9 C -0.089 4.089 10 N -0.288 5.288 11 N -0.308 5.308 12 C 0.070 3.930 13 C -0.550 4.550 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.048 0.952 35 H 0.001 0.999 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.785 -2.737 -14.360 14.728 hybrid contribution -1.051 -0.601 0.157 1.221 sum 0.734 -3.338 -14.203 14.608 Atomic orbital electron populations 1.22531 0.98811 1.01174 1.01427 1.21485 0.91011 0.98689 0.91619 0.90361 1.21868 0.94667 1.00794 0.97120 1.22397 0.95064 0.87064 0.98438 0.87630 1.22934 0.99881 0.98746 0.97368 1.23102 1.00272 0.97824 0.98506 1.23157 0.95608 0.97111 0.93000 1.63011 1.07199 1.12493 1.46117 1.60702 1.55026 1.10283 1.04830 1.19531 0.95033 0.91894 0.86505 1.21176 1.43306 0.96807 0.93748 0.92212 1.24975 0.95776 0.94902 0.98924 1.69960 1.49029 1.08991 1.25828 0.86582 0.79453 0.79403 0.82051 1.20230 1.21415 1.20388 0.93450 0.93236 0.92470 0.91863 0.93149 0.91542 0.91926 0.91506 0.92096 0.90344 0.91381 0.85557 0.85963 0.95197 0.99889 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.16 37.16 0.34 -2.54 16 2 C 0.08 1.47 2.54 -67.71 -0.17 1.30 16 3 H 0.08 1.53 7.36 -51.93 -0.38 1.15 16 4 C -0.11 -1.53 4.02 -26.73 -0.11 -1.64 16 5 C 0.08 1.20 3.32 -66.65 -0.22 0.98 16 6 H 0.11 1.97 7.63 -51.92 -0.40 1.57 16 7 C -0.15 -1.84 6.57 -25.37 -0.17 -2.01 16 8 C -0.16 -1.71 7.06 -24.87 -0.18 -1.88 16 9 C 0.04 0.51 7.55 -1.74 -0.01 0.49 16 10 N -0.66 -9.85 6.90 -102.92 -0.71 -10.56 16 11 N -0.68 -14.56 5.61 -107.99 -0.61 -15.17 16 12 C 0.20 5.27 5.24 -4.97 -0.03 5.24 16 13 C -0.51 -14.80 9.32 -34.44 -0.32 -15.13 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 17 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 23 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.64 8.02 -51.93 -0.42 0.23 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.33 4.47 8.32 -39.29 -0.33 4.15 16 33 H 0.32 6.73 8.46 -39.29 -0.33 6.40 16 34 H 0.03 0.88 8.05 -51.93 -0.42 0.46 16 35 H -0.02 -0.47 7.44 -51.93 -0.39 -0.86 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -30.14 288.57 -8.58 -38.73 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.37 Total: 5.91 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.96 Total: -13.67 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.58 Total: -52.47 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.14 -8.58 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086495194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.844 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds