Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09008 * 109.90548 * 54.29949 * 5 4 2 7 7 C 1.53991 * 109.91787 * 175.40409 * 5 4 2 8 8 C 1.54599 * 105.13957 * 120.58139 * 7 5 4 9 9 C 1.54940 * 102.92249 * 21.95528 * 8 7 5 10 10 N 1.47900 * 109.91899 * 293.19913 * 5 4 2 11 11 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 12 12 C 1.46900 * 110.99981 * 274.99476 * 11 2 1 13 13 C 1.50705 * 109.47101 * 180.02562 * 12 11 2 14 14 H 1.07997 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99964 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00225 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47002 * 60.00268 * 17 15 13 19 19 H 1.48498 * 109.47112 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.46934 * 300.00251 * 17 15 13 21 21 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 22 22 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 24 24 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 25 25 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 26 26 H 1.09005 * 110.30956 * 239.49292 * 7 5 4 27 27 H 1.08996 * 110.31192 * 1.56118 * 7 5 4 28 28 H 1.08999 * 110.72877 * 140.31690 * 8 7 5 29 29 H 1.09001 * 110.72233 * 263.41795 * 8 7 5 30 30 H 1.08995 * 110.66549 * 81.02656 * 9 8 7 31 31 H 1.08998 * 110.66235 * 204.15275 * 9 8 7 32 32 H 1.00903 * 111.00053 * 335.82832 * 10 5 4 33 33 H 1.00900 * 111.00332 * 38.95526 * 11 2 1 34 34 H 1.08996 * 109.47628 * 300.00315 * 12 11 2 35 35 H 1.09001 * 109.46729 * 60.00435 * 12 11 2 36 36 H 0.97001 * 120.00066 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 4.0023 -0.9792 -0.3848 7 6 4.0988 -1.4323 -2.5035 8 6 4.8431 -0.4116 -3.3947 9 6 5.1668 0.7384 -2.4081 10 7 3.9613 0.7938 -1.5376 11 7 2.0196 -0.6926 1.1994 12 6 2.0825 0.2225 2.3469 13 6 2.5886 -0.5217 3.5557 14 1 2.8388 -1.5695 3.4791 15 6 2.7320 0.1351 4.7594 16 7 2.4268 1.4109 4.8529 17 14 3.3599 -0.7872 6.2577 18 1 4.7165 -1.3221 5.9770 19 1 3.4234 0.1378 7.4176 20 1 2.4397 -1.9102 6.5691 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7515 -1.7715 -1.2057 25 1 1.6053 -0.2617 -2.1370 26 1 4.7869 -2.2022 -2.1544 27 1 3.2729 -1.8847 -3.0525 28 1 5.7592 -0.8453 -3.7955 29 1 4.1987 -0.0616 -4.2012 30 1 6.0529 0.5020 -1.8192 31 1 5.2991 1.6786 -2.9435 32 1 3.2186 1.3125 -1.9821 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0461 2.1183 35 1 1.0871 0.6162 2.5525 36 1 2.5273 1.8729 5.6999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086495194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = -37.802070 kcal Electronic energy + Delta-G solvation = -14454.583839 eV Core-core repulsion = 12164.631693 eV Total energy + Delta-G solvation = -2289.952146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91136 -37.69838 -34.96681 -32.49590 -30.76327 -30.37198 -27.88132 -26.21504 -23.75819 -22.62756 -21.40033 -20.96744 -18.49698 -17.05824 -16.67575 -16.26100 -15.97160 -15.49148 -14.98480 -14.57641 -14.50384 -14.02928 -13.65394 -13.35380 -13.11171 -12.99792 -12.64499 -12.59745 -12.44311 -12.24888 -12.00846 -11.86624 -11.59344 -11.48178 -11.29490 -11.09624 -10.63070 -9.36763 -8.93256 -8.19266 -6.30345 1.40464 1.44803 1.52540 2.41494 3.13438 3.40154 3.68988 3.90804 3.93158 4.04990 4.26031 4.35465 4.44001 4.62941 4.67456 4.71242 4.73403 4.89629 4.96591 5.04295 5.06576 5.13019 5.15649 5.22930 5.33896 5.38965 5.46576 5.58597 5.66966 6.05956 6.08869 6.55575 6.62792 6.82047 6.99081 7.40519 8.92083 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.006924 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.162618 B = 4042.825312 C = 4399.043287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 H 0.054 0.946 4 C -0.093 4.093 5 C 0.080 3.920 6 H 0.060 0.940 7 C -0.145 4.145 8 C -0.147 4.147 9 C 0.038 3.962 10 N -0.688 5.688 11 N -0.676 5.676 12 C 0.218 3.782 13 C -0.534 4.534 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.265 1.265 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.336 0.664 33 H 0.330 0.670 34 H -0.008 1.008 35 H -0.043 1.043 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -4.422 -16.308 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 H 0.072 0.928 4 C -0.132 4.132 5 C -0.030 4.030 6 H 0.079 0.921 7 C -0.184 4.184 8 C -0.186 4.186 9 C -0.091 4.091 10 N -0.317 5.317 11 N -0.306 5.306 12 C 0.090 3.910 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.190 1.190 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.010 0.990 35 H -0.025 1.025 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.751 -4.063 -15.692 16.304 hybrid contribution -1.042 -0.136 0.522 1.173 sum 0.709 -4.199 -15.171 15.757 Atomic orbital electron populations 1.22427 0.97079 1.02179 1.01464 1.21572 0.92430 0.97584 0.91361 0.92788 1.21772 0.94308 1.01049 0.96051 1.22214 0.95220 0.87723 0.97857 0.92130 1.22866 1.00480 0.98600 0.96461 1.23040 1.01010 0.96475 0.98044 1.23198 0.94037 0.98851 0.93057 1.62906 1.08365 1.12692 1.47724 1.60580 1.56095 1.09724 1.04209 1.19081 0.92366 0.91481 0.88114 1.21558 1.43682 0.97156 0.94861 0.91904 1.25967 0.95679 0.95787 1.02428 1.70102 1.49868 1.10751 1.26862 0.85397 0.79072 0.78238 0.77637 1.19497 1.20775 1.18956 0.90495 0.91696 0.95321 0.90896 0.90249 0.91889 0.90235 0.90080 0.90496 0.91805 0.89661 0.84737 0.85319 0.99010 1.02532 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 9.16 71.98 0.66 -4.69 16 2 C 0.08 2.86 2.54 44.92 0.11 2.98 16 3 H 0.05 2.18 7.36 -2.39 -0.02 2.16 16 4 C -0.09 -2.54 4.02 30.59 0.12 -2.42 16 5 C 0.08 2.35 3.32 45.06 0.15 2.50 16 6 H 0.06 2.33 7.63 -2.38 -0.02 2.31 16 7 C -0.14 -3.24 6.57 31.47 0.21 -3.04 16 8 C -0.15 -2.78 7.06 31.80 0.22 -2.55 16 9 C 0.04 0.89 7.55 86.60 0.65 1.54 16 10 N -0.69 -20.33 6.90 -479.54 -3.31 -23.64 16 11 N -0.68 -29.77 5.61 -495.58 -2.78 -32.55 16 12 C 0.22 12.18 5.24 85.56 0.45 12.63 16 13 C -0.53 -31.64 9.32 25.60 0.24 -31.40 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 16 N -0.94 -58.59 13.29 21.45 0.28 -58.31 16 17 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 23 H 0.03 1.03 7.45 -2.38 -0.02 1.01 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.08 1.75 8.02 -2.39 -0.02 1.73 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.08 1.53 7.69 -2.39 -0.02 1.51 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.34 8.84 8.32 -89.69 -0.75 8.09 16 33 H 0.33 13.81 8.46 -89.69 -0.76 13.05 16 34 H -0.01 -0.52 8.05 -2.39 -0.02 -0.54 16 35 H -0.04 -2.58 7.44 -2.39 -0.02 -2.59 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -66.92 288.57 -0.96 -67.88 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.46 Total: 22.94 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.28 Total: -24.03 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -5.81 Total: -114.49 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -66.92 -0.96 -67.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086495194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds