Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.50698 * 109.47136 * 120.00671 * 2 1 3 5 5 H 1.07993 * 120.00623 * 114.73340 * 4 2 1 6 6 C 1.37879 * 119.99788 * 294.73158 * 4 2 1 7 7 N 1.31508 * 120.00131 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99776 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47156 * 89.99954 * 8 6 4 10 10 H 1.48504 * 109.47145 * 209.99536 * 8 6 4 11 11 H 1.48498 * 109.47221 * 329.99744 * 8 6 4 12 12 N 1.46908 * 109.46966 * 240.00439 * 2 1 3 13 13 C 1.46847 * 110.99636 * 295.83473 * 12 2 1 14 14 C 1.53035 * 109.52090 * 174.16209 * 13 12 2 15 15 C 1.53123 * 109.27810 * 59.18083 * 14 13 12 16 16 H 1.09002 * 109.52574 * 182.44190 * 15 14 13 17 17 N 1.46895 * 109.52073 * 62.25419 * 15 14 13 18 18 C 1.53118 * 109.15920 * 302.34473 * 15 14 13 19 19 H 1.08996 * 109.50862 * 297.71312 * 18 15 14 20 20 C 1.53011 * 109.53227 * 177.61297 * 18 15 14 21 21 C 1.46848 * 110.99641 * 171.63225 * 12 2 1 22 22 H 1.09004 * 109.47245 * 59.99978 * 1 2 3 23 23 H 1.09005 * 109.47617 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47484 * 299.99949 * 1 2 3 25 25 H 0.97005 * 119.99720 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.46569 * 294.17960 * 13 12 2 27 27 H 1.08998 * 109.46522 * 54.16257 * 13 12 2 28 28 H 1.09001 * 109.51035 * 179.12488 * 14 13 12 29 29 H 1.09000 * 109.50364 * 299.24501 * 14 13 12 30 30 H 1.00893 * 111.00608 * 60.31582 * 17 15 14 31 31 H 1.00907 * 111.00115 * 184.27617 * 17 15 14 32 32 H 1.09001 * 109.46842 * 300.09806 * 20 18 15 33 33 H 1.08990 * 109.47028 * 60.10138 * 20 18 15 34 34 H 1.09003 * 109.46590 * 180.10443 * 20 18 15 35 35 H 1.08994 * 109.46693 * 65.82152 * 21 12 2 36 36 H 1.09002 * 109.45170 * 305.84215 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5812 -1.6355 1.1336 6 6 1.7911 -0.1796 2.4798 7 7 2.2298 -0.7994 3.5535 8 14 0.8410 1.4200 2.6473 9 1 -0.6094 1.1242 2.7661 10 1 1.2995 2.1434 3.8605 11 1 1.0775 2.2641 1.4487 12 7 2.0196 -0.6924 -1.1996 13 6 1.6317 -2.1087 -1.1848 14 6 2.0299 -2.7618 -2.5102 15 6 3.5430 -2.6298 -2.7045 16 1 3.8252 -3.0552 -3.6675 17 7 4.2404 -3.3447 -1.6273 18 6 3.9269 -1.1480 -2.6675 19 1 3.4398 -0.6251 -3.4905 20 6 5.4449 -1.0093 -2.8013 21 6 3.4738 -0.5416 -1.3374 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 2.0598 -0.4260 4.4325 26 1 2.1383 -2.6155 -0.3635 27 1 0.5530 -2.1884 -1.0505 28 1 1.7559 -3.8167 -2.4930 29 1 1.5129 -2.2643 -3.3308 30 1 4.0029 -4.3253 -1.6312 31 1 5.2388 -3.2142 -1.6938 32 1 5.9314 -1.5323 -1.9779 33 1 5.7672 -1.4425 -3.7480 34 1 5.7172 0.0458 -2.7730 35 1 3.9718 -1.0558 -0.5155 36 1 3.7328 0.5169 -1.3139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086886159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -22.848897 kcal Electronic energy + Delta-G solvation = -15361.922236 eV Core-core repulsion = 13072.618508 eV Total energy + Delta-G solvation = -2289.303728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39228 -37.07406 -34.32711 -33.15870 -32.08798 -29.96895 -27.18089 -26.85528 -24.51077 -23.07349 -21.12280 -19.87456 -18.46463 -17.24016 -16.95714 -16.29318 -15.88534 -15.43487 -15.08547 -14.57730 -14.17198 -14.08412 -13.79753 -13.60341 -13.24905 -13.11199 -12.68634 -12.59805 -12.36516 -11.94637 -11.81468 -11.62781 -11.58718 -11.27617 -11.06131 -10.93179 -10.69891 -9.41896 -8.72571 -8.25880 -6.28908 1.31045 1.35649 1.46044 2.34254 3.09157 3.36897 3.78370 3.90744 4.02286 4.24223 4.40458 4.55566 4.64579 4.72382 4.77024 4.80180 4.80482 4.96595 5.03672 5.06228 5.09375 5.17797 5.22082 5.28690 5.42840 5.47732 5.52390 5.56585 5.72263 6.28436 6.43407 6.50641 6.64504 6.74333 6.81873 7.38530 8.90675 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039185 B = 0.010019 C = 0.009720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.381443 B = 2794.029009 C = 2879.924349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.527 4.527 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.943 3.057 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.248 1.248 12 N -0.524 5.524 13 C 0.070 3.930 14 C -0.104 4.104 15 C 0.101 3.899 16 H 0.052 0.948 17 N -0.856 5.856 18 C -0.079 4.079 19 H 0.080 0.920 20 C -0.142 4.142 21 C 0.077 3.923 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.343 0.657 31 H 0.344 0.656 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -1.584 -14.620 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.566 4.566 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.770 3.230 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.171 1.171 12 N -0.247 5.247 13 C -0.058 4.058 14 C -0.142 4.142 15 C -0.010 4.010 16 H 0.070 0.930 17 N -0.390 5.390 18 C -0.098 4.098 19 H 0.098 0.902 20 C -0.200 4.200 21 C -0.051 4.051 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.352 -0.878 -14.378 14.468 hybrid contribution 0.504 -0.383 1.022 1.202 sum 1.856 -1.260 -13.355 13.542 Atomic orbital electron populations 1.21983 0.96958 1.00897 0.99423 1.19633 0.92793 0.94050 0.87257 0.95500 1.21885 1.34385 1.08783 0.91591 0.94266 1.25828 0.96583 1.00549 0.95545 1.70083 1.48767 1.41666 0.98606 0.85906 0.79138 0.80378 0.77597 1.19169 1.22569 1.17150 1.62409 1.12366 1.12550 1.37364 1.21771 0.98631 0.88544 0.96880 1.21640 0.95402 1.00079 0.97115 1.21316 0.93786 0.93718 0.92165 0.93011 1.58618 1.12999 1.16406 1.50990 1.21215 0.96627 0.95176 0.96788 0.90173 1.21764 0.94190 1.02132 1.01891 1.21787 0.88312 0.98254 0.96761 0.91991 0.93196 0.94870 0.92886 0.96155 0.92855 0.91131 0.90506 0.84329 0.84114 0.92972 0.90825 0.92478 0.96285 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 8.66 71.98 0.62 -5.24 16 2 C 0.17 8.28 1.91 44.17 0.08 8.37 16 3 H 0.03 1.35 6.71 -2.39 -0.02 1.34 16 4 C -0.53 -30.55 7.74 25.60 0.20 -30.35 16 5 H 0.04 2.57 6.10 -2.91 -0.02 2.55 16 6 C 0.01 0.71 5.45 84.66 0.46 1.17 16 7 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 8 Si 0.94 45.91 24.65 68.60 1.69 47.60 16 9 H -0.27 -12.32 6.88 99.48 0.68 -11.64 16 10 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.25 -11.27 6.39 99.48 0.64 -10.64 16 12 N -0.52 -22.00 4.62 -875.52 -4.04 -26.04 16 13 C 0.07 2.79 4.64 86.33 0.40 3.19 16 14 C -0.10 -3.06 5.76 30.65 0.18 -2.89 16 15 C 0.10 2.70 3.14 45.00 0.14 2.85 16 16 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 17 N -0.86 -24.14 7.89 -168.35 -1.33 -25.46 16 18 C -0.08 -2.28 2.71 -10.74 -0.03 -2.31 16 19 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 20 C -0.14 -3.35 8.82 71.99 0.63 -2.71 16 21 C 0.08 3.06 4.31 86.33 0.37 3.43 16 22 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 23 H 0.05 2.14 6.38 -2.38 -0.02 2.13 16 24 H 0.03 1.46 3.98 -2.39 -0.01 1.45 16 25 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 26 H 0.02 0.97 5.91 -2.39 -0.01 0.95 16 27 H 0.05 2.14 6.15 -2.39 -0.01 2.13 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.34 8.45 9.04 -89.70 -0.81 7.64 16 31 H 0.34 8.59 6.97 -89.69 -0.62 7.96 16 32 H 0.05 1.30 6.55 -2.39 -0.02 1.28 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.02 0.89 6.84 -2.39 -0.02 0.87 16 36 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 Total: -1.00 -66.96 262.59 -0.77 -67.72 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.45 Total: 21.20 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.06 Total: -24.49 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -5.07 Total: -112.05 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.69 Total: 47.60 kcal Total: -66.96 -0.77 -67.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.875 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds