Wall clock time and date at job start Mon Mar 30 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.53862 * 2 1 4 4 C 1.53040 * 109.50027 * 239.89574 * 2 1 3 5 5 N 1.46846 * 109.52188 * 180.87971 * 4 2 1 6 6 C 1.46893 * 110.99991 * 185.84258 * 5 4 2 7 7 C 1.53004 * 109.47282 * 170.00153 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00083 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00147 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00278 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47228 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.46793 * 300.00001 * 12 10 8 15 15 H 1.48500 * 109.47000 * 60.00094 * 12 10 8 16 16 C 1.46845 * 111.19717 * 61.74755 * 5 4 2 17 17 C 1.53043 * 109.52382 * 298.25565 * 16 5 4 18 18 C 1.53120 * 109.50058 * 120.09928 * 2 1 3 19 19 H 1.09000 * 109.52268 * 297.49761 * 18 2 1 20 20 N 1.46904 * 109.52705 * 57.68879 * 18 2 1 21 21 H 1.09000 * 109.47364 * 180.10175 * 1 2 3 22 22 H 1.09001 * 109.46850 * 300.09989 * 1 2 3 23 23 H 1.08999 * 109.47470 * 60.09705 * 1 2 3 24 24 H 1.09004 * 109.45745 * 60.87062 * 4 2 1 25 25 H 1.08997 * 109.46473 * 300.89837 * 4 2 1 26 26 H 1.09000 * 109.47487 * 50.00120 * 6 5 4 27 27 H 1.08998 * 109.47524 * 290.00160 * 6 5 4 28 28 H 1.08994 * 109.47074 * 60.00280 * 7 6 5 29 29 H 1.08998 * 109.47285 * 300.00116 * 7 6 5 30 30 H 0.97005 * 119.99661 * 359.97438 * 11 10 8 31 31 H 1.09001 * 109.46111 * 58.26830 * 16 5 4 32 32 H 1.08998 * 109.46418 * 178.23823 * 16 5 4 33 33 H 1.08994 * 109.50254 * 299.23987 * 17 16 5 34 34 H 1.08996 * 109.53703 * 179.14007 * 17 16 5 35 35 H 1.00898 * 111.00298 * 180.02562 * 20 18 2 36 36 H 1.00904 * 110.99818 * 303.95523 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7236 -1.2480 5 7 3.5092 -0.7423 -1.2379 6 6 4.0371 -1.3061 -2.4874 7 6 5.5496 -1.0831 -2.5486 8 6 6.0912 -1.6620 -3.8302 9 1 5.4234 -2.1408 -4.5311 10 6 7.4392 -1.5806 -4.1079 11 7 8.2525 -0.9981 -3.2541 12 14 8.1106 -2.2976 -5.6968 13 1 9.5785 -2.0812 -5.7561 14 1 7.8220 -3.7535 -5.7436 15 1 7.4649 -1.6274 -6.8540 16 6 4.0228 -1.4732 -0.0724 17 6 3.5712 -0.7720 1.2108 18 6 2.0411 -0.7238 1.2487 19 1 1.7156 -0.1871 2.1398 20 7 1.5074 -2.0922 1.2761 21 1 -0.3634 -1.0276 0.0018 22 1 -0.3633 0.5154 0.8891 23 1 -0.3634 0.5123 -0.8908 24 1 1.6905 -0.2023 -2.1389 25 1 1.6647 -1.7465 -1.2543 26 1 3.5627 -0.8146 -3.3368 27 1 3.8258 -2.3748 -2.5216 28 1 6.0239 -1.5746 -1.6993 29 1 5.7609 -0.0143 -2.5144 30 1 7.9038 -0.6254 -2.4292 31 1 3.6373 -2.4926 -0.0843 32 1 5.1120 -1.4965 -0.1095 33 1 3.9678 0.2430 1.2298 34 1 3.9395 -1.3229 2.0761 35 1 1.8307 -2.5902 2.0919 36 1 0.4994 -2.0882 1.2312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086886846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:28 Heat of formation + Delta-G solvation = -18.550151 kcal Electronic energy + Delta-G solvation = -14692.914276 eV Core-core repulsion = 12403.796955 eV Total energy + Delta-G solvation = -2289.117321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21764 -35.41101 -33.11234 -32.23099 -30.32565 -28.58206 -26.10016 -24.34166 -22.46981 -22.09386 -19.96898 -18.74474 -16.68824 -16.18904 -15.55307 -14.75287 -14.59709 -13.98984 -13.64025 -13.27077 -13.10421 -12.90165 -12.55157 -12.18842 -11.76286 -11.64497 -11.28722 -11.00489 -10.76647 -10.69918 -10.34364 -10.12450 -10.07868 -9.87460 -9.48941 -8.67643 -8.48222 -8.23240 -7.55521 -6.28730 -3.96520 3.48315 3.50853 3.69409 4.40797 4.57728 4.67757 4.80056 4.93702 5.10655 5.32024 5.49211 5.58522 5.60424 5.73219 5.77806 5.92715 5.95643 5.97226 6.12028 6.19792 6.30538 6.41381 6.46561 6.54884 6.64789 6.94545 7.13704 7.40311 7.42659 7.57421 7.84862 7.88722 8.34232 8.54934 8.97127 9.75638 11.12482 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059518 B = 0.006288 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.331921 B = 4452.156318 C = 4651.706254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.077 0.923 4 C 0.069 3.931 5 N -0.541 5.541 6 C 0.072 3.928 7 C 0.015 3.985 8 C -0.602 4.602 9 H 0.046 0.954 10 C 0.015 3.985 11 N -0.914 5.914 12 Si 1.069 2.931 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.288 1.288 16 C 0.063 3.937 17 C -0.109 4.109 18 C 0.096 3.904 19 H 0.029 0.971 20 N -0.843 5.843 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.269 0.731 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.337 0.663 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 0.315 9.233 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.060 4.060 5 N -0.266 5.266 6 C -0.054 4.054 7 C -0.022 4.022 8 C -0.641 4.641 9 H 0.065 0.935 10 C -0.189 4.189 11 N -0.551 5.551 12 Si 0.897 3.103 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.215 1.215 16 C -0.065 4.065 17 C -0.147 4.147 18 C -0.016 4.016 19 H 0.047 0.953 20 N -0.374 5.374 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.026 0.974 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.150 0.850 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.268 0.480 7.703 14.493 hybrid contribution -2.233 -0.321 1.727 2.841 sum -14.500 0.159 9.429 17.297 Atomic orbital electron populations 1.21821 0.95663 1.01614 1.01515 1.21202 0.94512 0.99715 0.94828 0.90417 1.21935 0.88838 0.98880 0.96319 1.62011 1.06443 1.54754 1.03374 1.22109 0.98630 0.95702 0.88995 1.19219 0.89421 0.96743 0.96807 1.22036 0.95540 1.41076 1.05415 0.93527 1.25817 0.93665 0.95842 1.03547 1.70766 1.37933 1.35569 1.10783 0.83550 0.76152 0.75910 0.74654 1.20793 1.21539 1.21487 1.21923 1.00027 0.95262 0.89255 1.21627 0.93814 1.01495 0.97808 1.21370 0.95490 0.88608 0.96088 0.95313 1.58744 1.14284 1.16273 1.48139 0.92456 0.93122 0.92419 0.92047 0.94291 0.92284 0.96224 0.97425 0.96756 0.92040 0.94291 0.90732 0.91069 0.92263 0.85050 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.82 37.16 0.33 -1.18 16 2 C -0.08 -1.08 2.71 -90.54 -0.25 -1.33 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.07 1.11 4.60 -3.83 -0.02 1.09 16 5 N -0.54 -10.48 4.66 -234.67 -1.09 -11.57 16 6 C 0.07 1.65 4.90 -3.83 -0.02 1.63 16 7 C 0.02 0.42 4.21 -27.88 -0.12 0.30 16 8 C -0.60 -17.85 9.11 -34.44 -0.31 -18.17 16 9 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 10 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 11 N -0.91 -28.86 13.65 55.43 0.76 -28.10 16 12 Si 1.07 26.00 29.90 -169.99 -5.08 20.92 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 C 0.06 1.15 5.15 -3.83 -0.02 1.13 16 17 C -0.11 -1.56 5.77 -26.65 -0.15 -1.71 16 18 C 0.10 1.17 3.14 -67.59 -0.21 0.96 16 19 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 20 N -0.84 -9.36 7.89 -4.56 -0.04 -9.39 16 21 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.98 8.02 -51.93 -0.42 0.57 16 25 H 0.04 0.65 7.68 -51.93 -0.40 0.25 16 26 H 0.06 1.33 7.99 -51.93 -0.41 0.92 16 27 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.01 0.21 6.29 -51.93 -0.33 -0.11 16 29 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 30 H 0.27 8.51 7.22 -40.82 -0.29 8.21 16 31 H 0.04 0.72 7.68 -51.93 -0.40 0.33 16 32 H 0.07 1.51 6.21 -51.93 -0.32 1.19 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.34 3.26 9.04 -39.29 -0.36 2.90 16 36 H 0.34 3.19 6.96 -39.29 -0.27 2.92 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -31.64 277.65 -8.26 -39.89 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.12 Total: 1.01 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.87 Total: -16.94 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.37 Total: -49.07 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.64 -8.26 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.345 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds