Wall clock time and date at job start Mon Mar 30 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.53862 * 2 1 4 4 C 1.53040 * 109.50027 * 239.89574 * 2 1 3 5 5 N 1.46846 * 109.52188 * 180.87971 * 4 2 1 6 6 C 1.46893 * 110.99991 * 185.84258 * 5 4 2 7 7 C 1.53004 * 109.47282 * 170.00153 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00083 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00147 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00278 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47228 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.46793 * 300.00001 * 12 10 8 15 15 H 1.48500 * 109.47000 * 60.00094 * 12 10 8 16 16 C 1.46845 * 111.19717 * 61.74755 * 5 4 2 17 17 C 1.53043 * 109.52382 * 298.25565 * 16 5 4 18 18 C 1.53120 * 109.50058 * 120.09928 * 2 1 3 19 19 H 1.09000 * 109.52268 * 297.49761 * 18 2 1 20 20 N 1.46904 * 109.52705 * 57.68879 * 18 2 1 21 21 H 1.09000 * 109.47364 * 180.10175 * 1 2 3 22 22 H 1.09001 * 109.46850 * 300.09989 * 1 2 3 23 23 H 1.08999 * 109.47470 * 60.09705 * 1 2 3 24 24 H 1.09004 * 109.45745 * 60.87062 * 4 2 1 25 25 H 1.08997 * 109.46473 * 300.89837 * 4 2 1 26 26 H 1.09000 * 109.47487 * 50.00120 * 6 5 4 27 27 H 1.08998 * 109.47524 * 290.00160 * 6 5 4 28 28 H 1.08994 * 109.47074 * 60.00280 * 7 6 5 29 29 H 1.08998 * 109.47285 * 300.00116 * 7 6 5 30 30 H 0.97005 * 119.99661 * 359.97438 * 11 10 8 31 31 H 1.09001 * 109.46111 * 58.26830 * 16 5 4 32 32 H 1.08998 * 109.46418 * 178.23823 * 16 5 4 33 33 H 1.08994 * 109.50254 * 299.23987 * 17 16 5 34 34 H 1.08996 * 109.53703 * 179.14007 * 17 16 5 35 35 H 1.00898 * 111.00298 * 180.02562 * 20 18 2 36 36 H 1.00904 * 110.99818 * 303.95523 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7236 -1.2480 5 7 3.5092 -0.7423 -1.2379 6 6 4.0371 -1.3061 -2.4874 7 6 5.5496 -1.0831 -2.5486 8 6 6.0912 -1.6620 -3.8302 9 1 5.4234 -2.1408 -4.5311 10 6 7.4392 -1.5806 -4.1079 11 7 8.2525 -0.9981 -3.2541 12 14 8.1106 -2.2976 -5.6968 13 1 9.5785 -2.0812 -5.7561 14 1 7.8220 -3.7535 -5.7436 15 1 7.4649 -1.6274 -6.8540 16 6 4.0228 -1.4732 -0.0724 17 6 3.5712 -0.7720 1.2108 18 6 2.0411 -0.7238 1.2487 19 1 1.7156 -0.1871 2.1398 20 7 1.5074 -2.0922 1.2761 21 1 -0.3634 -1.0276 0.0018 22 1 -0.3633 0.5154 0.8891 23 1 -0.3634 0.5123 -0.8908 24 1 1.6905 -0.2023 -2.1389 25 1 1.6647 -1.7465 -1.2543 26 1 3.5627 -0.8146 -3.3368 27 1 3.8258 -2.3748 -2.5216 28 1 6.0239 -1.5746 -1.6993 29 1 5.7609 -0.0143 -2.5144 30 1 7.9038 -0.6254 -2.4292 31 1 3.6373 -2.4926 -0.0843 32 1 5.1120 -1.4965 -0.1095 33 1 3.9678 0.2430 1.2298 34 1 3.9395 -1.3229 2.0761 35 1 1.8307 -2.5902 2.0919 36 1 0.4994 -2.0882 1.2312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086886846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:28 Heat of formation + Delta-G solvation = -41.579461 kcal Electronic energy + Delta-G solvation = -14693.912901 eV Core-core repulsion = 12403.796955 eV Total energy + Delta-G solvation = -2290.115946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48420 -36.98095 -35.17058 -33.30752 -31.88152 -30.16470 -27.29643 -26.22135 -24.22638 -23.40716 -21.69106 -19.87682 -18.92371 -17.18623 -16.86403 -16.13964 -15.99544 -15.69480 -15.43542 -14.79416 -14.53800 -14.07723 -13.88459 -13.73183 -13.47066 -12.95002 -12.75625 -12.59433 -12.34116 -12.01319 -11.96139 -11.87010 -11.67699 -11.34192 -11.12300 -10.70766 -10.53139 -9.62199 -9.07489 -8.70980 -6.40760 1.52066 1.61495 1.81061 2.56208 3.04554 3.15188 3.62840 3.76199 3.86603 4.06897 4.19828 4.32320 4.41340 4.50728 4.52701 4.62156 4.75163 4.82970 4.84584 4.90529 4.94245 4.97843 5.15599 5.17291 5.25490 5.29437 5.42516 5.48322 5.90818 6.15935 6.23707 6.30068 6.33528 6.56766 6.66648 7.42116 8.70078 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059518 B = 0.006288 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.331921 B = 4452.156318 C = 4651.706254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.070 0.930 4 C 0.069 3.931 5 N -0.550 5.550 6 C 0.088 3.912 7 C 0.023 3.977 8 C -0.623 4.623 9 H 0.050 0.950 10 C -0.038 4.038 11 N -0.936 5.936 12 Si 1.121 2.879 13 H -0.281 1.281 14 H -0.269 1.269 15 H -0.268 1.268 16 C 0.066 3.934 17 C -0.105 4.105 18 C 0.102 3.898 19 H 0.053 0.947 20 N -0.852 5.852 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.012 0.988 28 H -0.010 1.010 29 H -0.012 1.012 30 H 0.254 0.746 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.347 0.653 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 -0.039 9.421 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.059 4.059 5 N -0.275 5.275 6 C -0.040 4.040 7 C -0.015 4.015 8 C -0.661 4.661 9 H 0.068 0.932 10 C -0.235 4.235 11 N -0.573 5.573 12 Si 0.941 3.059 13 H -0.207 1.207 14 H -0.194 1.194 15 H -0.193 1.193 16 C -0.062 4.062 17 C -0.143 4.143 18 C -0.009 4.009 19 H 0.071 0.929 20 N -0.386 5.386 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.992 0.129 7.921 16.079 hybrid contribution -1.723 -0.202 1.711 2.437 sum -15.716 -0.074 9.632 18.433 Atomic orbital electron populations 1.21760 0.93017 1.02441 1.02623 1.21201 0.96625 0.98790 0.93421 0.91167 1.22034 0.86275 0.99227 0.98320 1.61973 1.08844 1.54472 1.02188 1.21768 0.95748 0.95397 0.91079 1.19075 0.92488 0.94501 0.95392 1.22461 0.96171 1.41140 1.06312 0.93196 1.27525 0.94413 0.95252 1.06346 1.70909 1.38335 1.37112 1.10937 0.82904 0.75629 0.76412 0.70931 1.20657 1.19367 1.19266 1.21877 0.97983 0.95558 0.90736 1.21607 0.95893 1.00786 0.96037 1.21263 0.93551 0.89530 0.96576 0.92888 1.58667 1.15304 1.15648 1.49004 0.91751 0.91146 0.92252 0.92157 0.94591 0.92264 0.96931 0.99225 0.99376 0.93670 0.94825 0.94100 0.91688 0.90462 0.83962 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.82 71.98 0.63 -1.77 16 2 C -0.08 -1.93 2.71 -10.74 -0.03 -1.96 16 3 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.07 2.16 4.60 86.33 0.40 2.56 16 5 N -0.55 -21.58 4.66 -896.36 -4.17 -25.75 16 6 C 0.09 4.09 4.90 86.31 0.42 4.52 16 7 C 0.02 1.29 4.21 29.85 0.13 1.41 16 8 C -0.62 -37.61 9.11 25.60 0.23 -37.38 16 9 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 10 C -0.04 -2.31 5.46 84.65 0.46 -1.84 16 11 N -0.94 -60.45 13.65 21.45 0.29 -60.16 16 12 Si 1.12 51.81 29.90 68.60 2.05 53.87 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 16 C 0.07 2.44 5.15 86.33 0.44 2.89 16 17 C -0.10 -2.89 5.77 30.65 0.18 -2.71 16 18 C 0.10 2.23 3.14 45.00 0.14 2.37 16 19 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 20 N -0.85 -16.65 7.89 -168.33 -1.33 -17.98 16 21 H 0.06 1.03 6.54 -2.39 -0.02 1.01 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.88 8.02 -2.38 -0.02 1.86 16 25 H 0.04 1.16 7.68 -2.39 -0.02 1.14 16 26 H 0.06 2.72 7.99 -2.39 -0.02 2.70 16 27 H 0.01 0.59 8.12 -2.39 -0.02 0.57 16 28 H -0.01 -0.62 6.29 -2.39 -0.02 -0.64 16 29 H -0.01 -0.74 8.01 -2.39 -0.02 -0.76 16 30 H 0.25 16.75 7.22 -92.70 -0.67 16.08 16 31 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 32 H 0.04 1.74 6.21 -2.39 -0.01 1.73 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.35 5.75 9.04 -89.70 -0.81 4.93 16 36 H 0.35 5.46 6.96 -89.69 -0.62 4.84 16 Total: -1.00 -69.23 277.65 -0.43 -69.66 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.28 Total: 12.28 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 3.01 Total: -31.92 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.21 Total: -103.88 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.87 kcal Total: -69.23 -0.43 -69.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.082 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds