Wall clock time and date at job start Mon Mar 30 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.50602 * 2 1 4 4 C 1.53123 * 109.50232 * 239.92152 * 2 1 3 5 5 C 1.53120 * 109.21163 * 182.37525 * 4 2 1 6 6 H 1.08997 * 109.50353 * 297.74224 * 5 4 2 7 7 N 1.46898 * 109.50209 * 177.62873 * 5 4 2 8 8 C 1.53166 * 109.20873 * 57.62805 * 5 4 2 9 9 N 1.46845 * 109.55463 * 300.85535 * 8 5 4 10 10 C 1.46900 * 111.00045 * 185.84196 * 9 8 5 11 11 C 1.52994 * 109.47274 * 65.79158 * 10 9 8 12 12 C 1.50708 * 109.47180 * 180.02562 * 11 10 9 13 13 H 1.07993 * 119.99759 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99785 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00057 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00257 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47434 * 90.00309 * 16 14 12 18 18 H 1.48501 * 109.47190 * 210.00571 * 16 14 12 19 19 H 1.48498 * 109.47268 * 330.00135 * 16 14 12 20 20 C 1.46848 * 111.19518 * 61.74755 * 9 8 5 21 21 H 1.09000 * 109.47300 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46953 * 300.07855 * 1 2 3 23 23 H 1.09000 * 109.47046 * 60.07625 * 1 2 3 24 24 H 1.09002 * 109.52319 * 302.31318 * 4 2 1 25 25 H 1.08995 * 109.52318 * 62.44000 * 4 2 1 26 26 H 1.00902 * 111.00006 * 180.02562 * 7 5 4 27 27 H 1.00904 * 110.99936 * 303.95358 * 7 5 4 28 28 H 1.09003 * 109.44926 * 180.83262 * 8 5 4 29 29 H 1.09002 * 109.44150 * 60.87652 * 8 5 4 30 30 H 1.09007 * 109.47226 * 185.79563 * 10 9 8 31 31 H 1.09007 * 109.47336 * 305.79107 * 10 9 8 32 32 H 1.08994 * 109.47394 * 300.00018 * 11 10 9 33 33 H 1.08996 * 109.47164 * 60.00188 * 11 10 9 34 34 H 0.97000 * 120.00203 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46097 * 178.23945 * 20 9 8 36 36 H 1.08996 * 109.46972 * 58.27256 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2490 5 6 3.5712 -0.7716 -1.2126 6 1 3.9677 0.2435 -1.2313 7 7 4.0663 -1.5139 -2.3795 8 6 4.0228 -1.4731 0.0718 9 7 3.5092 -0.7426 1.2375 10 6 4.0372 -1.3068 2.4869 11 6 5.5496 -1.0839 2.5481 12 6 6.0913 -1.6633 3.8296 13 1 5.4236 -2.1422 4.5303 14 6 7.4392 -1.5810 4.1077 15 7 7.9121 -2.0870 5.2257 16 14 8.5940 -0.7519 2.8959 17 1 8.6928 0.6947 3.2165 18 1 9.9397 -1.3729 2.9904 19 1 8.0678 -0.9185 1.5173 20 6 2.0409 -0.7240 1.2477 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5151 0.8893 23 1 -0.3633 0.5126 -0.8907 24 1 1.6451 -1.7387 -1.2696 25 1 1.7147 -0.1869 -2.1399 26 1 5.0743 -1.5599 -2.3778 27 1 3.6626 -2.4379 -2.4182 28 1 5.1120 -1.4965 0.1089 29 1 3.6372 -2.4926 0.0832 30 1 3.5628 -0.8156 3.3365 31 1 3.8259 -2.3757 2.5208 32 1 6.0240 -1.5751 1.6987 33 1 5.7609 -0.0151 2.5143 34 1 8.8604 -2.0294 5.4212 35 1 1.6905 -0.2031 2.1389 36 1 1.6646 -1.7469 1.2537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087041906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:34 Heat of formation + Delta-G solvation = -40.604096 kcal Electronic energy + Delta-G solvation = -14625.389382 eV Core-core repulsion = 12335.315730 eV Total energy + Delta-G solvation = -2290.073651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41883 -36.53112 -35.16725 -34.65835 -31.85603 -29.34718 -27.52897 -27.02995 -24.05537 -22.52676 -21.46760 -20.75690 -19.06455 -16.99719 -16.63293 -16.46984 -16.20340 -15.64102 -15.38730 -14.82229 -14.49207 -14.47731 -14.15228 -13.54562 -13.36402 -12.95975 -12.89652 -12.76098 -12.22504 -12.05082 -12.01535 -11.77109 -11.51768 -11.50077 -11.35039 -11.13183 -10.78926 -9.72764 -9.26894 -8.33628 -6.38301 1.33929 1.34669 1.47129 2.32927 2.91667 3.01648 3.54374 3.82579 3.91719 4.05728 4.11036 4.31289 4.36777 4.44260 4.54522 4.65771 4.71491 4.81095 4.82185 4.90411 4.91547 5.02864 5.14555 5.22791 5.31685 5.34450 5.42087 5.51687 5.58393 6.01466 6.16366 6.22686 6.31793 6.53669 6.69135 7.26625 8.83106 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039460 B = 0.007570 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.405971 B = 3697.812175 C = 4187.451685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.099 3.901 6 H 0.078 0.922 7 N -0.839 5.839 8 C 0.024 3.976 9 N -0.544 5.544 10 C 0.082 3.918 11 C 0.002 3.998 12 C -0.536 4.536 13 H 0.032 0.968 14 C 0.008 3.992 15 N -0.949 5.949 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.250 1.250 20 C 0.057 3.943 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.346 0.654 27 H 0.344 0.656 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.073 0.927 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 3.444 -15.157 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.014 4.014 6 H 0.096 0.904 7 N -0.367 5.367 8 C -0.106 4.106 9 N -0.268 5.268 10 C -0.046 4.046 11 C -0.035 4.035 12 C -0.574 4.574 13 H 0.050 0.950 14 C -0.189 4.189 15 N -0.590 5.590 16 Si 0.776 3.224 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.174 1.174 20 C -0.071 4.071 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.215 4.470 -15.545 20.269 hybrid contribution 1.044 -1.550 1.191 2.216 sum -11.171 2.920 -14.354 18.422 Atomic orbital electron populations 1.21729 0.93051 1.02174 1.02648 1.21120 0.96484 0.99727 0.92979 0.90741 1.21590 0.93133 1.00812 0.98079 1.21442 0.96231 0.97724 0.85960 0.90421 1.59083 1.13164 1.23027 1.41444 1.23084 0.99931 0.95221 0.92384 1.61924 1.08660 1.54227 1.02032 1.21820 0.96085 0.95684 0.90964 1.19420 0.93014 0.96304 0.94801 1.21409 0.93681 1.37496 1.04833 0.95001 1.25973 1.00144 0.95671 0.97150 1.70060 1.14810 1.47675 1.26419 0.85618 0.77546 0.78973 0.80241 1.19162 1.20684 1.17352 1.22254 0.86352 0.98862 0.99596 0.92591 0.92130 0.91138 0.92160 0.90193 0.84121 0.84321 0.92211 0.95774 0.91893 0.96783 0.96483 0.96232 0.92347 0.90876 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 71.98 0.66 -1.61 16 2 C -0.08 -1.80 2.89 -10.74 -0.03 -1.84 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.10 -2.05 4.82 30.68 0.15 -1.90 16 5 C 0.10 2.42 3.42 45.01 0.15 2.58 16 6 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 7 N -0.84 -17.61 9.26 -168.29 -1.56 -19.17 16 8 C 0.02 0.74 4.87 86.37 0.42 1.16 16 9 N -0.54 -18.48 4.66 -896.08 -4.17 -22.66 16 10 C 0.08 3.42 4.90 86.30 0.42 3.84 16 11 C 0.00 0.11 3.97 29.85 0.12 0.23 16 12 C -0.54 -31.71 9.66 25.60 0.25 -31.46 16 13 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 14 C 0.01 0.46 5.47 84.65 0.46 0.92 16 15 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 16 Si 0.95 45.23 27.47 68.60 1.88 47.12 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 20 C 0.06 1.56 4.74 86.33 0.41 1.97 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.35 6.96 9.04 -89.69 -0.81 6.15 16 27 H 0.34 6.37 8.99 -89.69 -0.81 5.56 16 28 H 0.06 2.06 6.21 -2.39 -0.01 2.04 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 2.64 7.99 -2.38 -0.02 2.62 16 31 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 32 H 0.02 0.82 5.49 -2.39 -0.01 0.81 16 33 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.07 1.99 8.02 -2.38 -0.02 1.97 16 36 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.40 281.03 -1.16 -66.56 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.62 Total: 14.20 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 3.01 Total: -26.10 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -5.43 Total: -101.77 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -65.40 -1.16 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087041906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.958 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds