Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.50001 * 2 1 4 4 C 1.53119 * 109.50284 * 239.92595 * 2 1 3 5 5 C 1.53119 * 109.15969 * 182.36565 * 4 2 1 6 6 H 1.08996 * 109.50589 * 177.59344 * 5 4 2 7 7 N 1.46900 * 109.53886 * 297.69295 * 5 4 2 8 8 C 1.53036 * 109.27947 * 57.65064 * 5 4 2 9 9 N 1.46850 * 109.52573 * 300.82219 * 8 5 4 10 10 C 1.46898 * 111.00191 * 185.83550 * 9 8 5 11 11 C 1.53006 * 109.47006 * 66.04522 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.46848 * 111.19649 * 61.73973 * 9 8 5 21 21 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47496 * 300.07945 * 1 2 3 23 23 H 1.09006 * 109.46633 * 60.07611 * 1 2 3 24 24 H 1.08997 * 109.52504 * 62.46314 * 4 2 1 25 25 H 1.09000 * 109.52494 * 302.26431 * 4 2 1 26 26 H 1.00895 * 111.00691 * 179.82129 * 7 5 4 27 27 H 1.00902 * 110.99819 * 303.78308 * 7 5 4 28 28 H 1.08996 * 109.46596 * 180.80358 * 8 5 4 29 29 H 1.09004 * 109.45618 * 60.82957 * 8 5 4 30 30 H 1.09001 * 109.47062 * 306.04776 * 10 9 8 31 31 H 1.09001 * 109.47392 * 186.04223 * 10 9 8 32 32 H 1.09001 * 109.47002 * 60.00218 * 11 10 9 33 33 H 1.08993 * 109.46955 * 299.99780 * 11 10 9 34 34 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 35 35 H 1.08997 * 109.46076 * 58.27530 * 20 9 8 36 36 H 1.08998 * 109.46082 * 178.24099 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2490 5 6 3.5712 -0.7706 -1.2115 6 1 3.9396 -1.3217 -2.0767 7 7 4.1058 0.5975 -1.2376 8 6 4.0238 -1.4715 0.0714 9 7 3.5101 -0.7411 1.2372 10 6 4.0387 -1.3048 2.4865 11 6 5.5501 -1.0753 2.5501 12 6 6.0924 -1.6530 3.8320 13 1 5.4257 -2.1359 4.5312 14 6 7.4396 -1.5659 4.1118 15 7 8.2514 -0.9782 3.2602 16 14 8.1119 -2.2826 5.7004 17 1 9.5788 -2.0597 5.7623 18 1 7.8299 -3.7399 5.7444 19 1 7.4614 -1.6175 6.8579 20 6 2.0417 -0.7233 1.2478 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5150 0.8892 23 1 -0.3633 0.5127 -0.8907 24 1 1.7151 -0.1865 -2.1399 25 1 1.6459 -1.7389 -1.2693 26 1 5.1144 0.5922 -1.2107 27 1 3.7681 1.1023 -2.0433 28 1 5.1129 -1.4942 0.1081 29 1 3.6387 -2.4912 0.0832 30 1 3.8320 -2.3746 2.5185 31 1 3.5610 -0.8168 3.3361 32 1 5.7568 -0.0055 2.5181 33 1 6.0278 -1.5633 1.7006 34 1 7.9024 -0.6064 2.4351 35 1 1.6662 -1.7465 1.2541 36 1 1.6913 -0.2025 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087041909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -42.068534 kcal Electronic energy + Delta-G solvation = -14715.044495 eV Core-core repulsion = 12424.907341 eV Total energy + Delta-G solvation = -2290.137154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39526 -36.65167 -35.01264 -34.58921 -31.11707 -29.57985 -27.50911 -26.58965 -24.42284 -22.94654 -21.63939 -20.12434 -18.92803 -16.96394 -16.73157 -16.26646 -15.68379 -15.64666 -15.36875 -15.17389 -14.68230 -14.16077 -13.75474 -13.55254 -13.30173 -12.92435 -12.79748 -12.69242 -12.48114 -12.09677 -11.93466 -11.84511 -11.49380 -11.36152 -11.11656 -10.69302 -10.52694 -9.38233 -9.10518 -8.70167 -6.39967 1.51841 1.61038 1.80557 2.55970 3.00781 3.15679 3.63892 3.78647 3.84088 4.05176 4.18122 4.33605 4.43349 4.44352 4.50964 4.62534 4.73433 4.80245 4.87751 4.89428 4.92579 4.94603 5.03981 5.23772 5.29657 5.37395 5.44012 5.60547 5.90693 6.16624 6.20264 6.30611 6.42932 6.58188 6.73173 7.42645 8.70925 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051410 B = 0.006735 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.511516 B = 4156.347309 C = 4509.237311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.074 0.926 4 C -0.102 4.102 5 C 0.099 3.901 6 H 0.046 0.954 7 N -0.836 5.836 8 C 0.061 3.939 9 N -0.529 5.529 10 C 0.084 3.916 11 C 0.028 3.972 12 C -0.624 4.624 13 H 0.049 0.951 14 C -0.038 4.038 15 N -0.935 5.935 16 Si 1.120 2.880 17 H -0.281 1.281 18 H -0.269 1.269 19 H -0.269 1.269 20 C 0.061 3.939 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.338 0.662 27 H 0.346 0.654 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.012 0.988 31 H 0.058 0.942 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.255 0.745 35 H 0.024 0.976 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 0.211 -9.530 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.092 0.908 4 C -0.140 4.140 5 C -0.013 4.013 6 H 0.064 0.936 7 N -0.367 5.367 8 C -0.068 4.068 9 N -0.253 5.253 10 C -0.044 4.044 11 C -0.010 4.010 12 C -0.662 4.662 13 H 0.067 0.933 14 C -0.235 4.235 15 N -0.572 5.572 16 Si 0.940 3.060 17 H -0.207 1.207 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.067 4.067 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.819 0.568 -8.017 15.130 hybrid contribution -0.827 -0.866 -1.668 2.053 sum -13.646 -0.298 -9.685 16.736 Atomic orbital electron populations 1.21769 0.93596 1.02000 1.02392 1.20984 0.95456 1.00094 0.92847 0.90759 1.21660 0.93002 1.00791 0.98551 1.21332 0.96092 0.89743 0.94104 0.93597 1.58441 1.13980 1.15106 1.49206 1.22117 0.99119 0.94152 0.91404 1.61801 1.08184 1.54031 1.01290 1.21840 0.95992 0.95239 0.91308 1.19018 0.92310 0.94491 0.95166 1.22474 0.96227 1.41025 1.06455 0.93299 1.27486 0.94440 0.95278 1.06290 1.70903 1.38363 1.36938 1.11024 0.82914 0.75630 0.76392 0.71023 1.20678 1.19379 1.19374 1.22197 0.86621 0.98343 0.99533 0.92573 0.92603 0.91172 0.89985 0.91517 0.84925 0.84038 0.93304 0.95471 0.96959 0.92364 0.99398 0.99268 0.93597 0.95813 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.20 71.98 0.66 -1.93 16 2 C -0.07 -1.84 2.72 -10.74 -0.03 -1.87 16 3 H 0.07 2.09 7.73 -2.39 -0.02 2.08 16 4 C -0.10 -2.25 4.92 30.67 0.15 -2.09 16 5 C 0.10 2.63 3.60 44.97 0.16 2.79 16 6 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 7 N -0.84 -22.15 8.47 -168.47 -1.43 -23.58 16 8 C 0.06 2.14 4.92 86.32 0.42 2.57 16 9 N -0.53 -20.37 4.51 -896.35 -4.04 -24.42 16 10 C 0.08 3.85 4.90 86.31 0.42 4.27 16 11 C 0.03 1.53 4.22 29.85 0.13 1.66 16 12 C -0.62 -37.36 9.11 25.60 0.23 -37.13 16 13 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 14 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 15 N -0.94 -59.92 13.65 21.45 0.29 -59.63 16 16 Si 1.12 51.56 29.90 68.60 2.05 53.61 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.06 1.89 4.74 86.32 0.41 2.30 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.34 9.50 9.04 -89.70 -0.81 8.69 16 27 H 0.35 7.07 9.00 -89.69 -0.81 6.26 16 28 H 0.05 2.00 6.22 -2.39 -0.01 1.99 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 31 H 0.06 2.66 7.98 -2.39 -0.02 2.64 16 32 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 33 H -0.01 -0.63 6.30 -2.39 -0.02 -0.65 16 34 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 Total: -1.00 -68.21 282.15 -0.57 -68.78 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.47 Total: 16.46 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.02 Total: -31.23 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -5.17 Total: -107.62 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -68.21 -0.57 -68.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087041909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.713 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds