Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47636 * 2 1 4 4 C 1.50704 * 109.46795 * 119.99979 * 2 1 3 5 5 H 1.08003 * 120.00306 * 120.00156 * 4 2 1 6 6 C 1.37872 * 119.99965 * 300.00040 * 4 2 1 7 7 N 1.31515 * 120.00218 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00219 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47093 * 89.99918 * 8 6 4 10 10 H 1.48499 * 109.47448 * 210.00356 * 8 6 4 11 11 H 1.48509 * 109.46625 * 329.99767 * 8 6 4 12 12 N 1.46900 * 109.47177 * 239.99675 * 2 1 3 13 13 C 1.46846 * 110.99745 * 70.26014 * 12 2 1 14 14 C 1.53042 * 109.52025 * 174.15739 * 13 12 2 15 15 H 1.09002 * 109.50537 * 299.23859 * 14 13 12 16 16 C 1.52999 * 109.53526 * 179.13861 * 14 13 12 17 17 C 1.53119 * 109.27696 * 59.17887 * 14 13 12 18 18 C 1.53115 * 109.16284 * 302.34314 * 17 14 13 19 19 H 1.09001 * 109.50414 * 177.59756 * 18 17 14 20 20 N 1.46898 * 109.50542 * 297.71398 * 18 17 14 21 21 C 1.46843 * 111.00190 * 306.04746 * 12 2 1 22 22 H 1.09001 * 109.46984 * 60.00214 * 1 2 3 23 23 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47260 * 300.00257 * 1 2 3 25 25 H 0.97000 * 120.00189 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.46322 * 54.14706 * 13 12 2 27 27 H 1.08991 * 109.46240 * 294.17139 * 13 12 2 28 28 H 1.09001 * 109.47299 * 300.10024 * 16 14 13 29 29 H 1.08999 * 109.46968 * 60.09991 * 16 14 13 30 30 H 1.09000 * 109.47656 * 180.09831 * 16 14 13 31 31 H 1.09003 * 109.52152 * 62.25086 * 17 14 13 32 32 H 1.08999 * 109.52204 * 182.37142 * 17 14 13 33 33 H 1.00890 * 111.00462 * 179.97438 * 20 18 17 34 34 H 1.00902 * 111.00172 * 303.95570 * 20 18 17 35 35 H 1.08997 * 109.46271 * 65.82450 * 21 12 2 36 36 H 1.08996 * 109.46613 * 305.85583 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4827 7 7 2.1378 -0.8590 3.5566 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9757 1.9952 3.9067 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 1.7585 0.0997 -2.4079 14 6 2.4082 -0.5802 -3.6153 15 1 3.4856 -0.6424 -3.4619 16 6 2.1182 0.2335 -4.8781 17 6 1.8319 -1.9902 -3.7722 18 6 2.0745 -2.7786 -2.4823 19 1 1.6289 -3.7693 -2.5721 20 7 3.5193 -2.9091 -2.2515 21 6 1.4346 -2.0350 -1.3077 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9031 -0.5278 4.4376 26 1 2.1771 1.0985 -2.2849 27 1 0.6830 0.1739 -2.5681 28 1 1.0407 0.2954 -5.0310 29 1 2.5273 1.2375 -4.7653 30 1 2.5798 -0.2524 -5.7377 31 1 0.7609 -1.9266 -3.9644 32 1 2.3222 -2.4934 -4.6055 33 1 3.7052 -3.4257 -1.4051 34 1 3.9750 -3.3365 -3.0438 35 1 0.3605 -1.9508 -1.4730 36 1 1.6177 -2.5866 -0.3856 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087042525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = 3.414401 kcal Electronic energy + Delta-G solvation = -15274.191856 eV Core-core repulsion = 12986.026990 eV Total energy + Delta-G solvation = -2288.164866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98228 -35.17336 -33.37877 -32.13746 -29.39569 -28.09496 -26.21611 -25.17602 -23.42255 -21.23391 -19.70132 -18.47645 -16.43940 -15.51542 -15.17565 -14.63612 -14.45076 -14.29920 -13.50051 -13.23230 -12.85016 -12.60901 -12.17315 -12.06096 -11.77715 -11.56743 -11.39271 -11.10612 -10.91125 -10.57479 -10.21021 -10.02463 -9.97899 -9.69448 -9.39208 -8.93445 -8.51481 -8.05582 -7.08144 -6.00094 -3.96611 3.29458 3.40492 3.42473 4.45370 4.74820 5.02464 5.11890 5.23924 5.30578 5.36156 5.58364 5.83039 5.86064 5.92165 6.01804 6.09188 6.15439 6.18003 6.25133 6.31171 6.34238 6.45668 6.57978 6.63373 6.74056 6.86267 6.95657 7.27024 7.63164 7.75328 7.94319 8.11843 8.27950 8.77739 9.09647 9.63330 11.13217 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040781 B = 0.010033 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.422629 B = 2790.250863 C = 3193.841030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.179 3.821 3 H 0.037 0.963 4 C -0.493 4.493 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.903 5.903 8 Si 0.886 3.114 9 H -0.283 1.283 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.499 5.499 13 C 0.061 3.939 14 C -0.081 4.081 15 H 0.089 0.911 16 C -0.146 4.146 17 C -0.106 4.106 18 C 0.093 3.907 19 H 0.025 0.975 20 N -0.823 5.823 21 C 0.070 3.930 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.343 0.657 34 H 0.325 0.675 35 H 0.024 0.976 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -1.351 -13.945 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.071 3.929 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.542 5.542 8 Si 0.717 3.283 9 H -0.210 1.210 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.222 5.222 13 C -0.068 4.068 14 C -0.100 4.100 15 H 0.107 0.893 16 C -0.204 4.204 17 C -0.144 4.144 18 C -0.019 4.019 19 H 0.042 0.958 20 N -0.353 5.353 21 C -0.059 4.059 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.042 0.958 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.233 -0.602 -13.645 13.714 hybrid contribution -1.838 -0.107 0.116 1.845 sum -3.071 -0.709 -13.529 13.891 Atomic orbital electron populations 1.22835 1.02110 1.00780 0.98735 1.19794 0.88350 0.95296 0.89419 0.94477 1.20955 1.30926 1.13584 0.87706 0.89968 1.24923 0.96017 0.96550 0.95912 1.69883 1.46053 1.40456 0.97780 0.86898 0.80473 0.84139 0.76820 1.20987 1.22544 1.19412 1.61906 1.58123 1.01091 1.01034 1.22064 0.96661 0.97090 0.90997 1.21041 1.02107 0.93449 0.93372 0.89279 1.21830 1.00871 1.00034 0.97645 1.21642 0.99846 0.96482 0.96390 1.21421 0.89079 0.95744 0.95624 0.95753 1.58463 1.09537 1.60312 1.06968 1.21984 0.94357 0.91790 0.97781 0.95410 0.92747 0.93875 0.92798 0.91869 0.96500 0.93426 0.92866 0.93176 0.92604 0.92883 0.84395 0.86379 0.95812 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.15 7.93 37.16 0.29 -3.86 16 2 C 0.18 4.33 1.90 -68.86 -0.13 4.20 16 3 H 0.04 0.95 7.04 -51.93 -0.37 0.58 16 4 C -0.49 -13.89 8.46 -34.44 -0.29 -14.18 16 5 H 0.08 2.52 7.38 -52.48 -0.39 2.14 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 8 Si 0.89 22.32 24.37 -169.99 -4.14 18.18 16 9 H -0.28 -6.97 6.87 56.52 0.39 -6.58 16 10 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 12 N -0.50 -10.49 4.45 -228.09 -1.01 -11.50 16 13 C 0.06 1.09 4.42 -3.83 -0.02 1.07 16 14 C -0.08 -1.21 2.72 -90.54 -0.25 -1.45 16 15 H 0.09 1.47 7.73 -51.93 -0.40 1.07 16 16 C -0.15 -1.78 9.20 37.16 0.34 -1.44 16 17 C -0.11 -1.46 4.92 -26.61 -0.13 -1.60 16 18 C 0.09 1.44 3.60 -67.63 -0.24 1.19 16 19 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 20 N -0.82 -12.39 8.46 -4.60 -0.04 -12.43 16 21 C 0.07 1.34 4.16 -3.83 -0.02 1.32 16 22 H 0.03 0.55 6.82 -51.93 -0.35 0.19 16 23 H 0.05 1.19 6.46 -51.93 -0.34 0.85 16 24 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 27 H 0.02 0.30 6.88 -51.93 -0.36 -0.06 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.34 5.25 9.04 -39.30 -0.36 4.89 16 34 H 0.32 4.02 8.99 -39.29 -0.35 3.66 16 35 H 0.02 0.45 6.57 -51.93 -0.34 0.11 16 36 H 0.08 1.84 6.72 -51.93 -0.35 1.49 16 LS Contribution 266.57 15.07 4.02 4.02 Total: -1.00 -29.95 266.57 -6.84 -36.80 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.90 Total: 4.83 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.54 Total: -12.90 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.28 Total: -50.92 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.95 -6.84 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.212 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds