Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.50822 * 2 1 4 4 C 1.53054 * 109.48443 * 120.04881 * 2 1 3 5 5 N 1.46951 * 109.36538 * 61.56987 * 4 2 1 6 6 C 1.46904 * 111.00106 * 183.18602 * 5 4 2 7 7 C 1.50701 * 109.47195 * 170.00137 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27796 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.46951 * 110.88318 * 59.31733 * 5 4 2 16 16 C 1.53054 * 109.36519 * 300.68279 * 15 5 4 17 17 H 1.09005 * 109.50009 * 298.42090 * 16 15 5 18 18 C 1.52999 * 109.49197 * 178.36946 * 16 15 5 19 19 N 1.46951 * 109.49037 * 239.93877 * 2 1 3 20 20 C 1.46904 * 110.99855 * 63.22434 * 19 2 1 21 21 H 1.09000 * 109.47199 * 299.94952 * 1 2 3 22 22 H 1.08997 * 109.46819 * 59.94690 * 1 2 3 23 23 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.49094 * 301.59537 * 4 2 1 25 25 H 1.09005 * 109.48139 * 181.53413 * 4 2 1 26 26 H 1.09000 * 109.47038 * 49.99280 * 6 5 4 27 27 H 1.09007 * 109.46566 * 289.99812 * 6 5 4 28 28 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.49376 * 60.64336 * 15 5 4 30 30 H 1.09003 * 109.49309 * 180.71628 * 15 5 4 31 31 H 1.08995 * 109.46947 * 300.10287 * 18 16 15 32 32 H 1.08999 * 109.47445 * 60.10857 * 18 16 15 33 33 H 1.08999 * 109.47146 * 180.10372 * 18 16 15 34 34 H 1.08999 * 109.46950 * 59.99415 * 20 19 2 35 35 H 1.08998 * 109.47054 * 180.02562 * 20 19 2 36 36 H 1.09003 * 109.46822 * 300.00114 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0406 -0.7225 1.2490 5 7 1.5809 -2.1181 1.2267 6 6 1.9877 -2.8260 2.4479 7 6 1.2986 -4.1650 2.5056 8 1 0.6255 -4.4604 1.7144 9 6 1.5228 -5.0102 3.5716 10 7 2.3422 -4.6503 4.5352 11 14 0.6626 -6.6667 3.6469 12 1 1.0424 -7.4761 2.4612 13 1 1.0702 -7.3802 4.8839 14 1 -0.8080 -6.4609 3.6554 15 6 2.0712 -2.8120 0.0277 16 6 1.5606 -2.0895 -1.2213 17 1 0.4709 -2.1133 -1.2355 18 6 2.1028 -2.7857 -2.4712 19 7 2.0204 -0.6939 -1.1990 20 6 1.6135 0.0139 -2.4202 21 1 -0.3633 0.5130 0.8904 22 1 -0.3633 0.5147 -0.8895 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6544 -0.2265 2.1394 25 1 3.1303 -0.6987 1.2628 26 1 1.7080 -2.2354 3.3204 27 1 3.0677 -2.9732 2.4398 28 1 2.4996 -5.2448 5.2853 29 1 3.1612 -2.8120 0.0276 30 1 1.7072 -3.8395 0.0277 31 1 3.1924 -2.7624 -2.4562 32 1 1.7616 -3.8208 -2.4875 33 1 1.7405 -2.2698 -3.3604 34 1 2.0236 1.0238 -2.4085 35 1 1.9890 -0.5211 -3.2925 36 1 0.5256 0.0642 -2.4657 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123568821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = 9.435941 kcal Electronic energy + Delta-G solvation = -15103.595792 eV Core-core repulsion = 12815.692039 eV Total energy + Delta-G solvation = -2287.903753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38478 -35.16815 -32.87495 -32.38966 -29.34282 -27.18729 -26.36290 -25.53080 -23.24811 -21.63658 -20.62719 -18.13889 -16.32680 -15.58430 -15.41638 -14.58060 -14.50078 -14.08166 -13.83337 -13.15205 -12.74253 -12.33497 -12.09395 -11.97639 -11.76923 -11.54953 -11.24792 -11.20458 -10.99321 -10.78191 -10.59337 -10.47889 -10.14745 -10.11371 -9.58564 -9.14576 -8.41092 -7.96907 -7.15831 -6.00196 -4.01598 3.34533 3.38522 3.41356 4.20969 4.44164 4.95797 5.22410 5.26622 5.35287 5.39172 5.49015 5.65827 5.68269 5.74572 5.84141 5.90762 6.05664 6.10814 6.12371 6.16819 6.28472 6.39481 6.46806 6.63081 6.71937 6.81467 7.27963 7.37341 7.41903 7.48296 7.82809 8.12868 8.25784 8.59151 9.05776 9.62442 11.10688 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043101 B = 0.008315 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.486180 B = 3366.568469 C = 3670.127336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.075 0.925 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.074 3.926 16 C 0.077 3.923 17 H 0.049 0.951 18 C -0.145 4.145 19 N -0.534 5.534 20 C 0.019 3.981 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.029 0.971 27 H -0.009 1.009 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 7.346 -11.435 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 H 0.093 0.907 4 C -0.068 4.068 5 N -0.260 5.260 6 C 0.069 3.931 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.055 4.055 16 C -0.031 4.031 17 H 0.067 0.933 18 C -0.203 4.203 19 N -0.259 5.259 20 C -0.129 4.129 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.438 7.272 -11.242 13.466 hybrid contribution -0.404 -0.844 0.212 0.959 sum -1.842 6.428 -11.030 12.899 Atomic orbital electron populations 1.22300 0.97121 1.03342 1.00583 1.21749 0.93452 0.96924 0.90311 0.90719 1.22076 0.97316 0.91460 0.95965 1.62243 1.59315 1.00475 1.04003 1.19693 0.94098 0.93434 0.85886 1.21117 1.26295 1.00555 1.06556 0.92016 1.24984 0.95450 0.98545 0.95615 1.69949 1.36293 1.37169 1.10448 0.86575 0.79978 0.83691 0.77235 1.20294 1.21362 1.20223 1.22013 0.97014 0.98112 0.88334 1.21799 0.97882 0.87696 0.95770 0.93277 1.21869 1.01803 1.00042 0.96547 1.62400 1.59352 1.02309 1.01813 1.22424 0.98326 0.98793 0.93353 0.92479 0.93924 0.90684 0.91113 0.95277 0.95266 0.99132 0.92894 0.95437 0.89743 0.92110 0.92122 0.92943 0.92078 0.91426 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.37 37.16 0.31 -2.32 16 2 C 0.08 1.33 2.97 -67.65 -0.20 1.13 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.06 1.16 5.04 -3.77 -0.02 1.14 16 5 N -0.54 -11.80 4.02 -235.91 -0.95 -12.75 16 6 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 7 C -0.51 -14.33 8.47 -34.44 -0.29 -14.63 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 11 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.07 1.50 4.71 -3.77 -0.02 1.48 16 16 C 0.08 1.26 2.18 -67.66 -0.15 1.12 16 17 H 0.05 0.85 6.35 -51.93 -0.33 0.52 16 18 C -0.14 -1.97 8.87 37.16 0.33 -1.64 16 19 N -0.53 -8.28 4.73 -226.75 -1.07 -9.36 16 20 C 0.02 0.24 8.93 60.07 0.54 0.78 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.56 6.48 -51.93 -0.34 0.23 16 23 H 0.07 1.31 5.94 -51.93 -0.31 1.00 16 24 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 27 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.62 6.27 -51.93 -0.33 0.29 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.76 6.04 -51.93 -0.31 0.45 16 36 H 0.03 0.31 6.39 -51.93 -0.33 -0.02 16 LS Contribution 273.51 15.07 4.12 4.12 Total: -1.00 -29.55 273.51 -7.83 -37.38 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.02 Total: -3.55 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 0.38 Total: -6.35 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.28 Total: -48.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.55 -7.83 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123568821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.811 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds