Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.50209 * 2 1 4 4 C 1.53045 * 109.48952 * 239.94134 * 2 1 3 5 5 N 1.46957 * 109.36439 * 181.63122 * 4 2 1 6 6 C 1.46904 * 110.99711 * 183.19065 * 5 4 2 7 7 C 1.50703 * 109.46874 * 170.00041 * 6 5 4 8 8 H 1.08006 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99556 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99737 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99730 * 11 9 7 15 15 C 1.46947 * 110.88115 * 59.32501 * 5 4 2 16 16 C 1.53057 * 109.36513 * 300.67740 * 15 5 4 17 17 H 1.08997 * 109.50823 * 178.37772 * 16 15 5 18 18 C 1.52999 * 109.48662 * 298.43816 * 16 15 5 19 19 N 1.46957 * 109.36212 * 58.40137 * 16 15 5 20 20 C 1.46902 * 111.00091 * 176.81404 * 19 16 15 21 21 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46898 * 300.05476 * 1 2 3 23 23 H 1.09000 * 109.47036 * 60.05560 * 1 2 3 24 24 H 1.09001 * 109.48601 * 61.66527 * 4 2 1 25 25 H 1.09000 * 109.49146 * 301.60390 * 4 2 1 26 26 H 1.09003 * 109.47066 * 50.00318 * 6 5 4 27 27 H 1.08996 * 109.47319 * 289.99791 * 6 5 4 28 28 H 0.96998 * 119.99255 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.49489 * 60.64422 * 15 5 4 30 30 H 1.08999 * 109.48983 * 180.71429 * 15 5 4 31 31 H 1.09006 * 109.46712 * 179.88663 * 18 16 15 32 32 H 1.08999 * 109.47056 * 299.88196 * 18 16 15 33 33 H 1.09004 * 109.47530 * 59.89103 * 18 16 15 34 34 H 1.08998 * 109.46909 * 183.79922 * 20 19 16 35 35 H 1.09001 * 109.46938 * 303.79929 * 20 19 16 36 36 H 1.08999 * 109.46804 * 63.80018 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 3.5097 -0.7553 -1.2263 6 6 4.0411 -1.3753 -2.4475 7 6 5.5334 -1.1728 -2.5052 8 1 6.0366 -0.6368 -1.7140 9 6 6.2561 -1.6709 -3.5684 10 7 5.6433 -2.3232 -4.5321 11 14 8.1059 -1.4206 -3.6395 12 1 8.4068 -0.1519 -4.3503 13 1 8.7314 -2.5551 -4.3654 14 1 8.6500 -1.3557 -2.2593 15 6 4.0000 -1.4491 -0.0273 16 6 3.4894 -0.7264 1.2216 17 1 3.8278 -1.2557 2.1123 18 6 4.0315 0.7042 1.2409 19 7 2.0203 -0.6938 1.1992 20 6 1.4888 -0.0738 2.4203 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5147 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.7022 -0.1930 -2.1393 25 1 1.6544 -1.7418 -1.2626 26 1 3.5780 -0.9145 -3.3201 27 1 3.8193 -2.4424 -2.4394 28 1 4.6828 -2.4534 -4.4950 29 1 3.6360 -2.4765 -0.0272 30 1 5.0899 -1.4490 -0.0273 31 1 3.6660 1.2191 2.1295 32 1 5.1210 0.6796 1.2576 33 1 3.6934 1.2330 0.3497 34 1 0.4000 -0.1233 2.4086 35 1 1.8673 -0.6067 3.2927 36 1 1.8048 0.9683 2.4658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123569051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = 5.267202 kcal Electronic energy + Delta-G solvation = -15128.893346 eV Core-core repulsion = 12840.808824 eV Total energy + Delta-G solvation = -2288.084523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46722 -35.34975 -32.90773 -32.63003 -29.32341 -27.07498 -26.31595 -25.36985 -23.08953 -21.98864 -20.80159 -18.23372 -16.71625 -15.66038 -15.46991 -14.79586 -14.17852 -14.02650 -13.72891 -13.46918 -12.92666 -12.30661 -12.14630 -11.95512 -11.76534 -11.73443 -11.52705 -11.03338 -10.99671 -10.88047 -10.58803 -10.52473 -10.19543 -10.09598 -9.79298 -8.64106 -8.34883 -8.03306 -7.26866 -6.34760 -4.03295 3.45215 3.48635 3.64455 4.14181 4.53159 4.83488 5.12671 5.22033 5.30681 5.42372 5.45982 5.56997 5.60435 5.69926 5.78441 5.82518 5.90220 6.01174 6.06366 6.18309 6.19869 6.25507 6.43828 6.51139 6.64167 6.75729 7.01784 7.11563 7.32845 7.38247 7.83464 8.03230 8.35286 8.61313 8.89580 9.67548 11.04485 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047966 B = 0.008211 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.608485 B = 3409.227016 C = 3797.266625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.050 0.950 4 C 0.061 3.939 5 N -0.529 5.529 6 C 0.183 3.817 7 C -0.586 4.586 8 H 0.057 0.943 9 C 0.013 3.987 10 N -0.916 5.916 11 Si 1.075 2.925 12 H -0.288 1.288 13 H -0.285 1.285 14 H -0.289 1.289 15 C 0.074 3.926 16 C 0.081 3.919 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.534 5.534 20 C 0.021 3.979 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.019 0.981 27 H -0.020 1.020 28 H 0.267 0.733 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 4.530 11.429 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.068 4.068 5 N -0.253 5.253 6 C 0.058 3.942 7 C -0.625 4.625 8 H 0.075 0.925 9 C -0.190 4.190 10 N -0.552 5.552 11 Si 0.903 3.097 12 H -0.215 1.215 13 H -0.211 1.211 14 H -0.215 1.215 15 C -0.055 4.055 16 C -0.027 4.027 17 H 0.095 0.905 18 C -0.231 4.231 19 N -0.259 5.259 20 C -0.127 4.127 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.037 0.963 27 H -0.002 1.002 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.050 4.204 10.506 12.832 hybrid contribution -1.424 0.321 0.909 1.719 sum -7.474 4.526 11.415 14.375 Atomic orbital electron populations 1.21871 0.94853 1.02228 1.01315 1.21701 0.94263 0.96548 0.90296 0.93168 1.22125 0.90217 0.98448 0.96054 1.62156 1.05100 1.54452 1.03618 1.19806 0.96382 0.91447 0.86611 1.21985 0.91734 1.38848 1.09915 0.92497 1.25843 1.06821 0.93849 0.92521 1.70761 1.11831 1.39174 1.33454 0.83461 0.74225 0.76482 0.75522 1.21473 1.21102 1.21486 1.22001 1.00740 0.94296 0.88482 1.21840 0.86314 0.95923 0.98650 0.90545 1.22280 1.01721 0.97828 1.01315 1.62406 1.08558 1.53131 1.01817 1.22401 1.00346 0.97186 0.92795 0.92085 0.92719 0.92288 0.91293 0.95280 0.96295 1.00192 0.92297 0.95553 0.89482 0.94029 0.92209 0.90962 0.91533 0.91948 0.95618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.86 37.16 0.33 -1.50 16 2 C 0.08 1.27 2.18 -67.65 -0.15 1.12 16 3 H 0.05 0.83 6.35 -51.93 -0.33 0.50 16 4 C 0.06 1.15 4.89 -3.77 -0.02 1.13 16 5 N -0.53 -11.74 4.02 -235.91 -0.95 -12.69 16 6 C 0.18 4.85 4.03 -4.97 -0.02 4.83 16 7 C -0.59 -16.77 8.47 -34.44 -0.29 -17.06 16 8 H 0.06 1.63 7.13 -52.48 -0.37 1.25 16 9 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 10 N -0.92 -28.23 13.65 55.43 0.76 -27.47 16 11 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.07 1.50 4.86 -3.77 -0.02 1.48 16 16 C 0.08 1.34 2.97 -67.65 -0.20 1.14 16 17 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 18 C -0.17 -2.74 8.37 37.16 0.31 -2.43 16 19 N -0.53 -8.28 4.73 -226.75 -1.07 -9.36 16 20 C 0.02 0.26 8.70 60.07 0.52 0.78 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.60 6.36 -51.93 -0.33 0.27 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 27 H -0.02 -0.55 7.99 -51.93 -0.41 -0.97 16 28 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.91 6.79 -51.93 -0.35 1.56 16 31 H 0.04 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.29 5.94 -51.93 -0.31 0.98 16 34 H 0.07 0.73 6.25 -51.93 -0.32 0.41 16 35 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 36 H 0.03 0.31 6.58 -51.93 -0.34 -0.03 16 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -30.38 272.52 -7.87 -38.25 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.99 Total: -3.13 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 0.37 Total: -10.22 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -1.26 Total: -49.52 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.38 -7.87 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123569051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.517 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds