Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.50209 * 2 1 4 4 C 1.53045 * 109.48952 * 239.94134 * 2 1 3 5 5 N 1.46957 * 109.36439 * 181.63122 * 4 2 1 6 6 C 1.46904 * 110.99711 * 183.19065 * 5 4 2 7 7 C 1.50703 * 109.46874 * 170.00041 * 6 5 4 8 8 H 1.08006 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00120 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99556 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99737 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99730 * 11 9 7 15 15 C 1.46947 * 110.88115 * 59.32501 * 5 4 2 16 16 C 1.53057 * 109.36513 * 300.67740 * 15 5 4 17 17 H 1.08997 * 109.50823 * 178.37772 * 16 15 5 18 18 C 1.52999 * 109.48662 * 298.43816 * 16 15 5 19 19 N 1.46957 * 109.36212 * 58.40137 * 16 15 5 20 20 C 1.46902 * 111.00091 * 176.81404 * 19 16 15 21 21 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46898 * 300.05476 * 1 2 3 23 23 H 1.09000 * 109.47036 * 60.05560 * 1 2 3 24 24 H 1.09001 * 109.48601 * 61.66527 * 4 2 1 25 25 H 1.09000 * 109.49146 * 301.60390 * 4 2 1 26 26 H 1.09003 * 109.47066 * 50.00318 * 6 5 4 27 27 H 1.08996 * 109.47319 * 289.99791 * 6 5 4 28 28 H 0.96998 * 119.99255 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.49489 * 60.64422 * 15 5 4 30 30 H 1.08999 * 109.48983 * 180.71429 * 15 5 4 31 31 H 1.09006 * 109.46712 * 179.88663 * 18 16 15 32 32 H 1.08999 * 109.47056 * 299.88196 * 18 16 15 33 33 H 1.09004 * 109.47530 * 59.89103 * 18 16 15 34 34 H 1.08998 * 109.46909 * 183.79922 * 20 19 16 35 35 H 1.09001 * 109.46938 * 303.79929 * 20 19 16 36 36 H 1.08999 * 109.46804 * 63.80018 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 3.5097 -0.7553 -1.2263 6 6 4.0411 -1.3753 -2.4475 7 6 5.5334 -1.1728 -2.5052 8 1 6.0366 -0.6368 -1.7140 9 6 6.2561 -1.6709 -3.5684 10 7 5.6433 -2.3232 -4.5321 11 14 8.1059 -1.4206 -3.6395 12 1 8.4068 -0.1519 -4.3503 13 1 8.7314 -2.5551 -4.3654 14 1 8.6500 -1.3557 -2.2593 15 6 4.0000 -1.4491 -0.0273 16 6 3.4894 -0.7264 1.2216 17 1 3.8278 -1.2557 2.1123 18 6 4.0315 0.7042 1.2409 19 7 2.0203 -0.6938 1.1992 20 6 1.4888 -0.0738 2.4203 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5147 0.8895 23 1 -0.3633 0.5130 -0.8905 24 1 1.7022 -0.1930 -2.1393 25 1 1.6544 -1.7418 -1.2626 26 1 3.5780 -0.9145 -3.3201 27 1 3.8193 -2.4424 -2.4394 28 1 4.6828 -2.4534 -4.4950 29 1 3.6360 -2.4765 -0.0272 30 1 5.0899 -1.4490 -0.0273 31 1 3.6660 1.2191 2.1295 32 1 5.1210 0.6796 1.2576 33 1 3.6934 1.2330 0.3497 34 1 0.4000 -0.1233 2.4086 35 1 1.8673 -0.6067 3.2927 36 1 1.8048 0.9683 2.4658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123569051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = -16.377668 kcal Electronic energy + Delta-G solvation = -15129.831938 eV Core-core repulsion = 12840.808824 eV Total energy + Delta-G solvation = -2289.023115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88035 -37.08254 -34.73651 -34.20836 -30.73244 -28.71701 -27.78663 -26.85904 -24.94154 -23.48353 -22.44474 -19.62072 -18.89561 -17.18830 -16.76927 -16.29397 -15.77904 -15.66510 -15.33705 -15.11655 -14.26391 -14.04893 -13.62285 -13.36420 -13.25620 -13.00060 -12.84019 -12.71764 -12.59695 -12.44893 -12.35336 -11.93270 -11.88107 -11.58385 -11.34297 -10.75324 -10.58673 -9.28804 -9.09721 -8.70220 -6.40697 1.52093 1.61598 1.79554 2.54526 2.93963 3.09785 3.17128 3.81359 3.95555 4.02472 4.15419 4.28803 4.43100 4.50441 4.58994 4.62108 4.68203 4.73038 4.74374 4.84286 4.88622 4.95845 4.99553 5.02122 5.10018 5.13465 5.29487 5.43770 5.74538 5.93071 6.09971 6.19545 6.36029 6.39817 6.61225 7.40248 8.68540 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047966 B = 0.008211 C = 0.007372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.608485 B = 3409.227016 C = 3797.266625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.047 0.953 4 C 0.058 3.942 5 N -0.532 5.532 6 C 0.195 3.805 7 C -0.596 4.596 8 H 0.056 0.944 9 C -0.038 4.038 10 N -0.938 5.938 11 Si 1.124 2.876 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.075 3.925 16 C 0.088 3.912 17 H 0.097 0.903 18 C -0.164 4.164 19 N -0.546 5.546 20 C 0.021 3.979 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.017 0.983 26 H -0.002 1.002 27 H -0.048 1.048 28 H 0.252 0.748 29 H 0.009 0.991 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 5.724 13.472 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 H 0.065 0.935 4 C -0.071 4.071 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.634 4.634 8 H 0.074 0.926 9 C -0.235 4.235 10 N -0.576 5.576 11 Si 0.945 3.055 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.054 4.054 16 C -0.020 4.020 17 H 0.115 0.885 18 C -0.223 4.223 19 N -0.271 5.271 20 C -0.126 4.126 21 H 0.076 0.924 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.035 0.965 26 H 0.016 0.984 27 H -0.031 1.031 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.252 5.413 12.581 15.055 hybrid contribution -1.444 -0.067 0.295 1.476 sum -7.697 5.346 12.876 15.925 Atomic orbital electron populations 1.21825 0.92066 1.02573 1.03005 1.21635 0.96307 0.95448 0.88755 0.93537 1.22249 0.88050 0.98347 0.98414 1.62110 1.07271 1.53747 1.02513 1.19519 0.95816 0.89735 0.88148 1.22269 0.92809 1.38464 1.09833 0.92615 1.27465 1.11353 0.92796 0.91932 1.70899 1.11082 1.40955 1.34660 0.82847 0.68772 0.77058 0.76822 1.19775 1.20806 1.19301 1.21994 0.99578 0.94030 0.89769 1.21741 0.87424 0.96060 0.96808 0.88481 1.22186 1.01377 0.97169 1.01562 1.62390 1.07619 1.54011 1.03040 1.22499 1.01333 0.97444 0.91314 0.92382 0.90277 0.91413 0.91526 0.96464 0.98377 1.03056 0.93856 0.97267 0.91582 0.91150 0.92724 0.93175 0.89852 0.90595 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.86 71.98 0.64 -2.45 16 2 C 0.09 2.60 2.18 44.92 0.10 2.70 16 3 H 0.05 1.45 6.35 -2.39 -0.02 1.43 16 4 C 0.06 2.24 4.89 86.31 0.42 2.66 16 5 N -0.53 -24.29 4.02 -900.29 -3.62 -27.91 16 6 C 0.19 10.79 4.03 85.56 0.34 11.13 16 7 C -0.60 -34.94 8.47 25.60 0.22 -34.73 16 8 H 0.06 3.23 7.13 -2.91 -0.02 3.21 16 9 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 10 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 11 Si 1.12 51.23 29.90 68.60 2.05 53.28 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 C 0.07 3.11 4.86 86.31 0.42 3.53 16 16 C 0.09 2.78 2.97 44.92 0.13 2.91 16 17 H 0.10 2.69 8.13 -2.39 -0.02 2.67 16 18 C -0.16 -4.87 8.37 71.98 0.60 -4.27 16 19 N -0.55 -15.63 4.73 -871.30 -4.12 -19.75 16 20 C 0.02 0.44 8.70 127.69 1.11 1.55 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.08 1.43 6.36 -2.39 -0.02 1.41 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.00 -0.10 7.89 -2.39 -0.02 -0.12 16 27 H -0.05 -2.89 7.99 -2.39 -0.02 -2.91 16 28 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 2.97 6.79 -2.39 -0.02 2.96 16 31 H 0.07 1.68 6.56 -2.38 -0.02 1.66 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.71 5.94 -2.39 -0.01 1.70 16 34 H 0.08 1.46 6.25 -2.39 -0.01 1.44 16 35 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 36 H 0.03 0.64 6.58 -2.39 -0.02 0.63 16 Total: -1.00 -66.91 272.52 0.18 -66.72 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.13 Total: 5.49 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.45 Total: -18.77 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -7.45 Total: -106.73 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -66.91 0.18 -66.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123569051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.345 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds