Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.36895 * 2 1 4 4 C 1.54383 * 110.32431 * 237.82016 * 2 1 3 5 5 N 1.48562 * 104.58988 * 217.25115 * 4 2 1 6 6 C 1.46903 * 110.99499 * 159.03755 * 5 4 2 7 7 C 1.50708 * 109.47019 * 69.87499 * 6 5 4 8 8 H 1.08002 * 119.99870 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99596 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00411 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99781 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47375 * 89.99699 * 11 9 7 13 13 H 1.48503 * 109.47215 * 210.00098 * 11 9 7 14 14 H 1.48504 * 109.47031 * 329.99644 * 11 9 7 15 15 C 1.48554 * 104.22697 * 39.48302 * 5 4 2 16 16 C 1.54253 * 110.32403 * 122.17826 * 2 1 3 17 17 H 1.09000 * 110.32726 * 237.79165 * 16 2 1 18 18 N 1.46899 * 110.32234 * 0.02562 * 16 2 1 19 19 C 1.46905 * 111.00255 * 157.86974 * 18 16 2 20 20 C 1.46904 * 110.99932 * 281.81598 * 18 16 2 21 21 H 1.08999 * 109.47415 * 192.66819 * 1 2 3 22 22 H 1.08998 * 109.47344 * 312.67259 * 1 2 3 23 23 H 1.09007 * 109.47179 * 72.66919 * 1 2 3 24 24 H 1.08999 * 110.40735 * 336.02891 * 4 2 1 25 25 H 1.09001 * 110.41132 * 98.47300 * 4 2 1 26 26 H 1.09000 * 109.46933 * 189.86857 * 6 5 4 27 27 H 1.08997 * 109.47376 * 309.87406 * 6 5 4 28 28 H 0.96999 * 119.99834 * 179.97438 * 10 9 7 29 29 H 1.08996 * 110.41763 * 201.73506 * 15 5 4 30 30 H 1.09002 * 110.51209 * 79.34048 * 15 5 4 31 31 H 1.08999 * 109.46972 * 53.07279 * 19 18 16 32 32 H 1.08998 * 109.47669 * 173.07519 * 19 18 16 33 33 H 1.09005 * 109.47051 * 293.07704 * 19 18 16 34 34 H 1.09000 * 109.46341 * 43.71639 * 20 18 16 35 35 H 1.09001 * 109.47228 * 163.71116 * 20 18 16 36 36 H 1.08993 * 109.47585 * 283.71921 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2253 5 7 3.2694 -1.4828 -0.7224 6 6 3.6068 -2.6217 -1.5868 7 6 4.1190 -2.1137 -2.9099 8 1 4.1867 -1.0510 -3.0908 9 6 4.5013 -3.0055 -3.8895 10 7 4.4193 -4.2994 -3.6691 11 14 5.1369 -2.3758 -5.5293 12 1 6.6104 -2.2063 -5.4570 13 1 4.8027 -3.3518 -6.5975 14 1 4.5027 -1.0688 -5.8371 15 6 2.8807 -1.9421 0.6358 16 6 2.0658 -0.7703 1.2243 17 1 2.7081 -0.1267 1.8252 18 7 0.9512 -1.2805 2.0339 19 6 1.3794 -2.4137 2.8648 20 6 0.3682 -0.2137 2.8587 21 1 -0.3634 -1.0026 0.2254 22 1 -0.3634 0.6965 0.7556 23 1 -0.3634 0.3061 -0.9811 24 1 1.3229 -1.4848 -1.5803 25 1 2.3394 -0.0778 -2.0209 26 1 4.3766 -3.2263 -1.1071 27 1 2.7170 -3.2295 -1.7508 28 1 4.6879 -4.9268 -4.3584 29 1 3.7670 -2.1308 1.2415 30 1 2.2654 -2.8398 0.5739 31 1 2.2575 -2.1281 3.4440 32 1 0.5725 -2.6931 3.5422 33 1 1.6262 -3.2608 2.2247 34 1 0.2619 0.6911 2.2603 35 1 -0.6111 -0.5277 3.2198 36 1 1.0214 -0.0130 3.7079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124136869.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = -2.605956 kcal Electronic energy + Delta-G solvation = -14876.166879 eV Core-core repulsion = 12587.740951 eV Total energy + Delta-G solvation = -2288.425928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68141 -37.27112 -34.98772 -33.43128 -30.68323 -28.29933 -28.17432 -26.78012 -24.81143 -23.20773 -21.75559 -20.15686 -18.46406 -17.39073 -16.99233 -16.27763 -15.76736 -15.56138 -15.12049 -14.85399 -14.47219 -13.84131 -13.48906 -13.33156 -13.14647 -13.01060 -12.95117 -12.81960 -12.51471 -12.38993 -12.11258 -11.81935 -11.78781 -11.43217 -11.32834 -11.24616 -10.63329 -9.25916 -9.15158 -8.23281 -6.34167 1.39823 1.42099 1.53339 2.39000 2.92781 3.09307 3.55924 3.64649 3.75810 4.14883 4.26697 4.37606 4.50319 4.53413 4.64050 4.69304 4.73550 4.74957 4.86366 4.96998 4.98631 5.02553 5.06747 5.14452 5.19713 5.25730 5.38677 5.60645 5.64759 5.93435 6.11523 6.14316 6.27963 6.48156 6.81241 7.35916 8.88579 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054318 B = 0.007220 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.358058 B = 3876.980679 C = 4185.881862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 H 0.084 0.916 4 C 0.055 3.945 5 N -0.521 5.521 6 C 0.201 3.799 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.973 3.027 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.264 1.264 15 C 0.034 3.966 16 C 0.093 3.907 17 H 0.057 0.943 18 N -0.546 5.546 19 C 0.021 3.979 20 C 0.020 3.980 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.001 0.999 27 H -0.037 1.037 28 H 0.265 0.735 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 8.311 11.490 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.074 4.074 5 N -0.245 5.245 6 C 0.074 3.926 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.797 3.203 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.188 1.188 15 C -0.094 4.094 16 C -0.016 4.016 17 H 0.075 0.925 18 N -0.271 5.271 19 C -0.127 4.127 20 C -0.128 4.128 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.019 0.981 27 H -0.020 1.020 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.921 8.309 11.109 15.975 hybrid contribution 0.560 -0.715 -0.460 1.019 sum -7.361 7.593 10.649 15.008 Atomic orbital electron populations 1.21757 0.92685 1.02888 1.01010 1.21943 0.97471 0.98475 0.92292 0.89806 1.22956 0.90296 0.96591 0.97534 1.65352 1.32765 1.24254 1.02124 1.19488 0.93148 0.87963 0.91989 1.21429 1.42783 0.93436 0.98793 0.92033 1.25972 0.95841 0.94894 1.03055 1.70093 1.49198 1.02446 1.35844 0.85324 0.78755 0.78287 0.77898 1.19673 1.20539 1.18787 1.23222 0.97788 0.96815 0.91592 1.22286 0.90490 0.94413 0.94387 0.92529 1.62141 1.30438 1.09567 1.24948 1.22438 0.99992 0.93850 0.96399 1.22649 0.99819 0.94571 0.95741 0.92126 0.90486 0.93632 0.96204 0.91767 0.98135 1.01953 0.92578 0.91281 0.94717 0.95212 0.89761 0.92688 0.90220 0.90135 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.84 71.98 0.56 -2.67 16 2 C -0.08 -2.52 3.45 -9.90 -0.03 -2.55 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 4 C 0.05 2.24 5.50 86.45 0.48 2.71 16 5 N -0.52 -24.21 5.36 -886.01 -4.75 -28.96 16 6 C 0.20 11.37 4.57 85.56 0.39 11.77 16 7 C -0.53 -31.17 8.82 25.60 0.23 -30.95 16 8 H 0.06 3.58 7.61 -2.91 -0.02 3.55 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 11 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 C 0.03 1.32 4.96 86.45 0.43 1.75 16 16 C 0.09 2.81 2.85 45.81 0.13 2.94 16 17 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 18 N -0.55 -13.85 3.29 -917.96 -3.02 -16.87 16 19 C 0.02 0.50 8.80 127.69 1.12 1.62 16 20 C 0.02 0.36 8.78 127.69 1.12 1.49 16 21 H 0.06 1.74 7.10 -2.39 -0.02 1.72 16 22 H 0.08 1.56 5.71 -2.39 -0.01 1.55 16 23 H 0.04 1.15 8.13 -2.38 -0.02 1.13 16 24 H 0.02 0.88 7.54 -2.39 -0.02 0.86 16 25 H 0.06 2.71 7.94 -2.39 -0.02 2.69 16 26 H 0.00 0.03 8.13 -2.39 -0.02 0.01 16 27 H -0.04 -2.28 7.88 -2.39 -0.02 -2.30 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.03 1.42 6.40 -2.39 -0.02 1.40 16 31 H 0.03 0.66 8.11 -2.39 -0.02 0.64 16 32 H 0.08 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.05 1.49 6.32 -2.38 -0.02 1.47 16 34 H 0.08 1.40 5.36 -2.39 -0.01 1.38 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.03 0.52 8.05 -2.39 -0.02 0.50 16 Total: -1.00 -65.98 276.93 0.46 -65.52 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.02 Total: 4.01 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.89 Total: -13.42 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -7.48 Total: -103.45 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.98 0.46 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124136869.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.918 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds