Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50694 * 109.47513 * 120.00034 * 2 1 3 5 5 H 1.07998 * 120.00419 * 119.99458 * 4 2 1 6 6 C 1.37883 * 119.99757 * 300.00380 * 4 2 1 7 7 N 1.31515 * 120.00045 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99936 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46984 * 90.00552 * 8 6 4 10 10 H 1.48504 * 109.47278 * 210.00366 * 8 6 4 11 11 H 1.48500 * 109.47511 * 330.00519 * 8 6 4 12 12 N 1.46902 * 109.47099 * 239.99972 * 2 1 3 13 13 C 1.46898 * 110.99896 * 56.03527 * 12 2 1 14 14 C 1.46899 * 111.00163 * 179.97438 * 12 2 1 15 15 H 1.09000 * 109.46895 * 55.26102 * 14 12 2 16 16 C 1.52996 * 109.47140 * 175.26793 * 14 12 2 17 17 N 1.46903 * 109.46902 * 304.99329 * 16 14 12 18 18 C 1.53007 * 109.47052 * 295.26247 * 14 12 2 19 19 C 1.52996 * 117.49799 * 175.72757 * 18 14 12 20 20 C 1.52994 * 60.03682 * 252.52699 * 19 18 14 21 21 H 1.09006 * 109.46908 * 293.14766 * 1 2 3 22 22 H 1.09000 * 109.47016 * 53.14229 * 1 2 3 23 23 H 1.08988 * 109.47243 * 173.14679 * 1 2 3 24 24 H 0.96998 * 119.99880 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.47045 * 183.95599 * 13 12 2 26 26 H 1.09000 * 109.47301 * 303.95701 * 13 12 2 27 27 H 1.08996 * 109.47340 * 63.95540 * 13 12 2 28 28 H 1.08997 * 109.47648 * 64.99864 * 16 14 12 29 29 H 1.09005 * 109.47100 * 185.00091 * 16 14 12 30 30 H 1.00899 * 110.99576 * 56.05125 * 17 16 14 31 31 H 1.00902 * 111.00058 * 180.02562 * 17 16 14 32 32 H 1.08996 * 115.56227 * 321.42825 * 18 14 12 33 33 H 1.09008 * 117.49351 * 145.02347 * 19 18 14 34 34 H 1.09000 * 117.50123 * 0.03315 * 19 18 14 35 35 H 1.08999 * 117.50065 * 107.47382 * 20 19 18 36 36 H 1.08998 * 117.50022 * 252.47794 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9954 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.4728 -0.0833 -2.4192 14 6 3.4881 -0.7116 -1.2337 15 1 3.8673 -1.1548 -0.3129 16 6 3.9596 -1.5400 -2.4305 17 7 3.3578 -2.8786 -2.3669 18 6 4.0139 0.7193 -1.3652 19 6 5.5296 0.9222 -1.3176 20 6 4.6638 1.3495 -0.1308 21 1 -0.3633 0.4040 0.9450 22 1 -0.3633 0.6164 -0.8223 23 1 -0.3633 -1.0202 -0.1226 24 1 1.9032 -0.5279 4.4375 25 1 1.7946 -0.6576 -3.2879 26 1 0.3840 -0.0817 -2.3678 27 1 1.8339 0.9413 -2.5069 28 1 3.6560 -1.0486 -3.3548 29 1 5.0458 -1.6285 -2.4059 30 1 2.3514 -2.8208 -2.3234 31 1 3.6543 -3.4458 -3.1470 32 1 3.4388 1.3732 -2.0207 33 1 5.9518 1.7097 -1.9420 34 1 6.1523 0.0363 -1.1931 35 1 4.7164 0.7445 0.7744 36 1 4.5166 2.4181 0.0259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126721368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = 42.545561 kcal Electronic energy + Delta-G solvation = -15378.879431 eV Core-core repulsion = 13092.411420 eV Total energy + Delta-G solvation = -2286.468012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.82542 -35.46781 -33.94593 -32.25489 -29.87409 -27.57348 -25.53305 -24.01712 -22.19076 -21.54192 -20.30001 -18.55339 -16.53679 -16.24086 -15.15461 -14.83746 -14.59565 -13.76315 -13.65436 -13.42287 -12.89681 -12.39959 -12.27092 -11.92637 -11.65981 -11.35109 -10.99052 -10.82977 -10.67926 -10.45011 -10.40283 -10.10978 -9.83473 -9.45693 -9.29791 -8.94764 -8.49619 -8.12458 -7.26326 -5.99686 -3.96461 3.28961 3.39630 3.41302 4.28171 4.44790 4.83199 4.97319 5.32237 5.37368 5.46892 5.52000 5.74186 5.76746 5.85115 5.93273 6.01475 6.10737 6.19606 6.30497 6.39522 6.40974 6.47716 6.55237 6.62397 6.78863 6.85557 7.08876 7.32832 7.65601 7.68986 8.00561 8.01074 8.15483 8.73547 9.10181 9.63014 11.13193 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.012327 C = 0.011144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.211389 B = 2270.982843 C = 2511.948620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.183 3.817 3 H 0.004 0.996 4 C -0.494 4.494 5 H 0.084 0.916 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.882 3.118 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.270 1.270 12 N -0.513 5.513 13 C 0.012 3.988 14 C 0.123 3.877 15 H 0.106 0.894 16 C 0.076 3.924 17 N -0.841 5.841 18 C -0.178 4.178 19 C -0.186 4.186 20 C -0.161 4.161 21 H 0.043 0.957 22 H 0.025 0.975 23 H 0.059 0.941 24 H 0.262 0.738 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.064 0.936 30 H 0.354 0.646 31 H 0.325 0.675 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 2.857 -11.562 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.076 3.924 3 H 0.021 0.979 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.539 5.539 8 Si 0.713 3.287 9 H -0.208 1.208 10 H -0.227 1.227 11 H -0.195 1.195 12 N -0.235 5.235 13 C -0.137 4.137 14 C 0.014 3.986 15 H 0.124 0.876 16 C -0.055 4.055 17 N -0.372 5.372 18 C -0.198 4.198 19 C -0.223 4.223 20 C -0.198 4.198 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.299 2.286 -10.642 11.125 hybrid contribution -0.893 2.106 -0.745 2.406 sum 1.405 4.392 -11.387 12.285 Atomic orbital electron populations 1.22250 0.99021 1.00874 0.98443 1.19661 0.90846 0.93032 0.88876 0.97882 1.20943 1.31361 1.13209 0.87695 0.89851 1.24895 0.95916 0.96379 0.95920 1.69885 1.46023 1.40232 0.97777 0.86961 0.80819 0.84190 0.76748 1.20791 1.22696 1.19503 1.62195 1.06148 1.53444 1.01748 1.22505 1.00397 0.96792 0.94017 1.21308 0.88003 0.90088 0.99237 0.87597 1.21760 0.98400 0.89227 0.96143 1.58538 1.15571 1.13596 1.49467 1.22968 0.94561 1.00155 1.02136 1.22846 0.93461 1.02863 1.03161 1.22935 1.02809 1.00521 0.93543 0.93871 0.95626 0.92178 0.92809 0.93082 0.91789 0.96439 0.96763 0.91786 0.83132 0.86406 0.88866 0.89964 0.89072 0.87407 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.09 37.16 0.30 -2.96 16 2 C 0.18 4.25 1.42 -68.87 -0.10 4.16 16 3 H 0.00 0.09 6.06 -51.93 -0.31 -0.23 16 4 C -0.49 -13.52 8.45 -34.44 -0.29 -13.82 16 5 H 0.08 2.54 6.94 -52.49 -0.36 2.17 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.88 22.04 24.42 -169.99 -4.15 17.88 16 9 H -0.28 -6.89 6.82 56.52 0.39 -6.50 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.51 -10.19 3.69 -228.30 -0.84 -11.04 16 13 C 0.01 0.19 8.50 60.06 0.51 0.70 16 14 C 0.12 2.31 2.02 -67.71 -0.14 2.17 16 15 H 0.11 2.40 6.12 -51.93 -0.32 2.09 16 16 C 0.08 1.20 5.66 -3.82 -0.02 1.18 16 17 N -0.84 -13.18 9.62 -10.37 -0.10 -13.28 16 18 C -0.18 -3.08 3.78 -90.58 -0.34 -3.42 16 19 C -0.19 -2.79 9.86 -26.74 -0.26 -3.06 16 20 C -0.16 -2.89 9.91 -26.69 -0.26 -3.15 16 21 H 0.04 1.00 3.22 -51.93 -0.17 0.84 16 22 H 0.02 0.48 6.67 -51.93 -0.35 0.14 16 23 H 0.06 1.30 8.14 -51.94 -0.42 0.88 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 26 H 0.06 1.04 6.17 -51.93 -0.32 0.72 16 27 H 0.02 0.29 6.03 -51.93 -0.31 -0.03 16 28 H 0.01 0.21 6.69 -51.93 -0.35 -0.14 16 29 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 30 H 0.35 5.79 8.09 -39.29 -0.32 5.48 16 31 H 0.33 4.12 9.08 -39.29 -0.36 3.76 16 32 H 0.09 1.60 6.05 -51.93 -0.31 1.28 16 33 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 34 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 35 H 0.11 2.21 8.07 -51.93 -0.42 1.79 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 269.35 15.07 4.06 4.06 Total: -1.00 -29.10 269.35 -6.47 -35.57 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.50 Total: 9.68 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.70 Total: -16.31 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.17 Total: -50.89 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.10 -6.47 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126721368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.111 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds