Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50694 * 109.47513 * 120.00034 * 2 1 3 5 5 H 1.07998 * 120.00419 * 119.99458 * 4 2 1 6 6 C 1.37883 * 119.99757 * 300.00380 * 4 2 1 7 7 N 1.31515 * 120.00045 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99936 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46984 * 90.00552 * 8 6 4 10 10 H 1.48504 * 109.47278 * 210.00366 * 8 6 4 11 11 H 1.48500 * 109.47511 * 330.00519 * 8 6 4 12 12 N 1.46902 * 109.47099 * 239.99972 * 2 1 3 13 13 C 1.46898 * 110.99896 * 56.03527 * 12 2 1 14 14 C 1.46899 * 111.00163 * 179.97438 * 12 2 1 15 15 H 1.09000 * 109.46895 * 55.26102 * 14 12 2 16 16 C 1.52996 * 109.47140 * 175.26793 * 14 12 2 17 17 N 1.46903 * 109.46902 * 304.99329 * 16 14 12 18 18 C 1.53007 * 109.47052 * 295.26247 * 14 12 2 19 19 C 1.52996 * 117.49799 * 175.72757 * 18 14 12 20 20 C 1.52994 * 60.03682 * 252.52699 * 19 18 14 21 21 H 1.09006 * 109.46908 * 293.14766 * 1 2 3 22 22 H 1.09000 * 109.47016 * 53.14229 * 1 2 3 23 23 H 1.08988 * 109.47243 * 173.14679 * 1 2 3 24 24 H 0.96998 * 119.99880 * 179.97438 * 7 6 4 25 25 H 1.09003 * 109.47045 * 183.95599 * 13 12 2 26 26 H 1.09000 * 109.47301 * 303.95701 * 13 12 2 27 27 H 1.08996 * 109.47340 * 63.95540 * 13 12 2 28 28 H 1.08997 * 109.47648 * 64.99864 * 16 14 12 29 29 H 1.09005 * 109.47100 * 185.00091 * 16 14 12 30 30 H 1.00899 * 110.99576 * 56.05125 * 17 16 14 31 31 H 1.00902 * 111.00058 * 180.02562 * 17 16 14 32 32 H 1.08996 * 115.56227 * 321.42825 * 18 14 12 33 33 H 1.09008 * 117.49351 * 145.02347 * 19 18 14 34 34 H 1.09000 * 117.50123 * 0.03315 * 19 18 14 35 35 H 1.08999 * 117.50065 * 107.47382 * 20 19 18 36 36 H 1.08998 * 117.50022 * 252.47794 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9954 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.4728 -0.0833 -2.4192 14 6 3.4881 -0.7116 -1.2337 15 1 3.8673 -1.1548 -0.3129 16 6 3.9596 -1.5400 -2.4305 17 7 3.3578 -2.8786 -2.3669 18 6 4.0139 0.7193 -1.3652 19 6 5.5296 0.9222 -1.3176 20 6 4.6638 1.3495 -0.1308 21 1 -0.3633 0.4040 0.9450 22 1 -0.3633 0.6164 -0.8223 23 1 -0.3633 -1.0202 -0.1226 24 1 1.9032 -0.5279 4.4375 25 1 1.7946 -0.6576 -3.2879 26 1 0.3840 -0.0817 -2.3678 27 1 1.8339 0.9413 -2.5069 28 1 3.6560 -1.0486 -3.3548 29 1 5.0458 -1.6285 -2.4059 30 1 2.3514 -2.8208 -2.3234 31 1 3.6543 -3.4458 -3.1470 32 1 3.4388 1.3732 -2.0207 33 1 5.9518 1.7097 -1.9420 34 1 6.1523 0.0363 -1.1931 35 1 4.7164 0.7445 0.7744 36 1 4.5166 2.4181 0.0259 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126721368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = 20.296471 kcal Electronic energy + Delta-G solvation = -15379.844224 eV Core-core repulsion = 13092.411420 eV Total energy + Delta-G solvation = -2287.432805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31271 -36.99386 -35.44352 -34.18821 -31.62296 -29.06647 -27.18518 -25.82109 -23.50631 -22.91884 -22.00241 -20.16522 -18.55926 -17.78254 -16.57418 -16.42279 -16.18184 -15.28945 -15.16372 -15.00474 -14.63807 -14.24216 -13.74885 -13.48711 -13.13465 -12.81553 -12.59801 -12.45466 -12.34761 -12.17993 -11.96597 -11.85800 -11.44023 -11.18819 -10.91761 -10.69724 -10.66270 -9.35118 -8.82618 -8.21172 -6.21105 1.29491 1.34711 1.44175 2.34799 2.92322 3.13405 3.33426 3.66289 4.04913 4.14699 4.20227 4.38121 4.43904 4.47922 4.59497 4.63192 4.71142 4.78064 4.80063 4.86252 4.90969 5.04795 5.07657 5.12861 5.18012 5.33233 5.52933 5.54176 5.73157 6.11857 6.40607 6.54938 6.80893 6.86207 6.86465 7.42157 8.95736 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.012327 C = 0.011144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.211389 B = 2270.982843 C = 2511.948620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.189 3.811 3 H -0.005 1.005 4 C -0.483 4.483 5 H 0.036 0.964 6 C 0.012 3.988 7 N -0.952 5.952 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.304 1.304 11 H -0.252 1.252 12 N -0.523 5.523 13 C 0.013 3.987 14 C 0.125 3.875 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.856 5.856 18 C -0.182 4.182 19 C -0.151 4.151 20 C -0.186 4.186 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.350 0.650 31 H 0.344 0.656 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 4.357 -14.396 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.081 3.919 3 H 0.012 0.988 4 C -0.521 4.521 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.593 5.593 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.232 1.232 11 H -0.176 1.176 12 N -0.246 5.246 13 C -0.135 4.135 14 C 0.015 3.985 15 H 0.071 0.929 16 C -0.046 4.046 17 N -0.388 5.388 18 C -0.202 4.202 19 C -0.189 4.189 20 C -0.223 4.223 21 H 0.049 0.951 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.707 3.777 -13.522 14.143 hybrid contribution -0.619 1.533 0.100 1.656 sum 1.087 5.310 -13.422 14.475 Atomic orbital electron populations 1.22166 0.97474 1.01511 0.99183 1.19429 0.91899 0.91947 0.88608 0.98756 1.21107 1.29681 1.11512 0.89831 0.94593 1.25684 0.97606 0.99592 0.95565 1.70048 1.48355 1.42541 0.98379 0.85948 0.79362 0.80601 0.76928 1.19527 1.23187 1.17621 1.62072 1.06951 1.53660 1.01932 1.22581 1.00765 0.97326 0.92851 1.21156 0.87510 0.91434 0.98364 0.92899 1.21657 0.98744 0.88895 0.95302 1.58483 1.15338 1.14084 1.50929 1.22932 0.96492 0.99103 1.01666 1.22926 0.92019 1.03393 1.00544 1.22815 1.06131 1.00401 0.92992 0.95118 0.92040 0.92382 0.92933 0.90697 0.91014 0.95733 0.94448 0.91010 0.83584 0.84317 0.87574 0.86733 0.88839 0.91550 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.09 71.98 0.58 -5.50 16 2 C 0.19 8.67 1.42 44.17 0.06 8.74 16 3 H -0.01 -0.24 6.06 -2.39 -0.01 -0.25 16 4 C -0.48 -27.44 8.45 25.60 0.22 -27.22 16 5 H 0.04 2.34 6.94 -2.91 -0.02 2.32 16 6 C 0.01 0.69 5.45 84.66 0.46 1.15 16 7 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 8 Si 0.94 45.78 24.42 68.60 1.68 47.46 16 9 H -0.27 -12.47 6.82 99.48 0.68 -11.79 16 10 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 11 H -0.25 -11.40 6.53 99.48 0.65 -10.75 16 12 N -0.52 -20.19 3.69 -876.20 -3.23 -23.42 16 13 C 0.01 0.38 8.50 127.69 1.09 1.46 16 14 C 0.12 4.63 2.02 44.92 0.09 4.72 16 15 H 0.05 2.53 6.12 -2.39 -0.01 2.52 16 16 C 0.09 2.50 5.66 86.30 0.49 2.99 16 17 N -0.86 -25.61 9.62 -186.71 -1.80 -27.40 16 18 C -0.18 -5.99 3.78 -10.77 -0.04 -6.04 16 19 C -0.15 -4.21 9.86 30.59 0.30 -3.91 16 20 C -0.19 -6.68 9.91 30.62 0.30 -6.38 16 21 H 0.03 1.35 3.22 -2.38 -0.01 1.34 16 22 H 0.06 2.11 6.67 -2.39 -0.02 2.10 16 23 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.07 1.88 6.43 -2.39 -0.02 1.87 16 26 H 0.07 2.03 6.17 -2.39 -0.01 2.01 16 27 H 0.02 0.70 6.03 -2.39 -0.01 0.69 16 28 H 0.04 0.95 6.69 -2.39 -0.02 0.93 16 29 H 0.07 2.00 7.76 -2.38 -0.02 1.98 16 30 H 0.35 10.96 8.09 -89.69 -0.73 10.23 16 31 H 0.34 7.97 9.08 -89.69 -0.81 7.16 16 32 H 0.11 3.27 6.05 -2.39 -0.01 3.26 16 33 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.09 2.57 7.93 -2.39 -0.02 2.55 16 35 H 0.07 2.91 8.07 -2.39 -0.02 2.89 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -65.70 269.35 -0.04 -65.74 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.54 Total: 27.76 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.55 Total: -29.98 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.73 Total: -110.97 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.68 Total: 47.46 kcal Total: -65.70 -0.04 -65.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126721368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.033 kcal (2) G-P(sol) polarization free energy of solvation -65.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds