Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.33259 * 2 1 4 4 C 1.54905 * 110.37450 * 237.62263 * 2 1 3 5 5 C 1.55144 * 101.65300 * 204.10153 * 4 2 1 6 6 H 1.09001 * 110.70444 * 277.27104 * 5 4 2 7 7 C 1.52997 * 110.70423 * 154.03585 * 5 4 2 8 8 N 1.46896 * 109.47059 * 174.99758 * 7 5 4 9 9 C 1.54315 * 103.01994 * 35.65515 * 5 4 2 10 10 N 1.47451 * 107.23237 * 337.71369 * 9 5 4 11 11 C 1.46900 * 111.00124 * 236.74078 * 10 9 5 12 12 C 1.52998 * 109.47137 * 290.84433 * 11 10 9 13 13 C 1.50704 * 109.46974 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99968 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00133 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 59.99443 * 17 15 13 19 19 H 1.48495 * 109.46994 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47274 * 299.99571 * 17 15 13 21 21 H 1.09003 * 109.47122 * 297.74707 * 1 2 3 22 22 H 1.08999 * 109.47632 * 57.75065 * 1 2 3 23 23 H 1.09001 * 109.47135 * 177.74809 * 1 2 3 24 24 H 1.09001 * 110.99033 * 322.19310 * 4 2 1 25 25 H 1.09004 * 110.99001 * 85.97201 * 4 2 1 26 26 H 1.09001 * 109.47541 * 294.99880 * 7 5 4 27 27 H 1.09004 * 109.46983 * 54.99828 * 7 5 4 28 28 H 1.00903 * 111.00658 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00264 * 303.95518 * 8 7 5 30 30 H 1.09000 * 109.88796 * 218.31037 * 9 5 4 31 31 H 1.08996 * 109.89065 * 97.12213 * 9 5 4 32 32 H 1.09004 * 109.46702 * 50.84508 * 11 10 9 33 33 H 1.09000 * 109.46598 * 170.84257 * 11 10 9 34 34 H 1.08998 * 109.47404 * 300.00133 * 12 11 10 35 35 H 1.09004 * 109.46814 * 60.00327 * 12 11 10 36 36 H 0.96998 * 120.00221 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0693 -0.7776 -1.2264 5 6 3.4786 -1.2004 -0.7344 6 1 4.1942 -0.3898 -0.8724 7 6 3.9465 -2.4657 -1.4561 8 7 5.3270 -2.7734 -1.0596 9 6 3.2535 -1.4799 0.7664 10 7 2.0447 -0.7395 1.1722 11 6 2.3356 0.1742 2.2850 12 6 2.6243 -0.6376 3.5493 13 6 2.9235 0.2998 4.6908 14 1 2.9087 1.3678 4.5305 15 6 3.2160 -0.2059 5.9396 16 7 3.2335 -1.5063 6.1348 17 14 3.5861 0.9561 7.3546 18 1 2.4149 1.8382 7.5901 19 1 3.8664 0.1682 8.5817 20 1 4.7706 1.7856 7.0171 21 1 -0.3633 0.4785 0.9095 22 1 -0.3634 0.5483 -0.8691 23 1 -0.3633 -1.0269 -0.0404 24 1 1.4515 -1.6504 -1.4379 25 1 2.1382 -0.1296 -2.1002 26 1 3.2969 -3.2987 -1.1871 27 1 3.9049 -2.3058 -2.5336 28 1 5.6596 -3.6055 -1.5235 29 1 5.9379 -1.9908 -1.2396 30 1 4.1118 -1.1320 1.3412 31 1 3.1055 -2.5478 0.9266 32 1 3.2054 0.7828 2.0374 33 1 1.4761 0.8219 2.4574 34 1 1.7546 -1.2462 3.7969 35 1 3.4839 -1.2853 3.3768 36 1 3.4390 -1.8621 7.0135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126954616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = -14.880802 kcal Electronic energy + Delta-G solvation = -14481.343391 eV Core-core repulsion = 12192.385185 eV Total energy + Delta-G solvation = -2288.958206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05564 -35.06963 -33.39648 -31.67026 -30.59432 -28.41111 -25.44060 -24.75544 -23.29544 -20.74314 -20.08571 -19.11559 -16.51470 -15.84906 -15.63710 -14.55277 -14.51731 -14.36919 -13.66026 -13.29779 -13.19500 -12.46274 -12.22713 -12.11364 -11.66755 -11.42886 -11.15374 -10.95533 -10.79021 -10.57798 -10.51500 -10.41699 -10.35434 -9.74388 -9.25625 -9.04566 -8.66308 -8.26508 -7.58229 -5.91766 -3.94232 3.37836 3.41939 3.44361 4.44207 4.45899 4.60751 4.82653 5.02051 5.10009 5.43522 5.43650 5.50938 5.56565 5.72958 5.78256 5.85658 5.99795 6.09816 6.13806 6.24666 6.38408 6.48149 6.55318 6.63041 6.72605 7.09011 7.10276 7.39734 7.65424 7.67522 7.88617 8.00654 8.19503 8.52306 9.13237 9.68790 11.19564 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033781 B = 0.007105 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.662576 B = 3939.790368 C = 4510.675927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 H 0.047 0.953 4 C -0.118 4.118 5 C -0.111 4.111 6 H 0.068 0.932 7 C 0.076 3.924 8 N -0.848 5.848 9 C 0.065 3.935 10 N -0.528 5.528 11 C 0.060 3.940 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.021 0.979 28 H 0.339 0.661 29 H 0.338 0.662 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 0.285 -16.100 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 H 0.065 0.935 4 C -0.156 4.156 5 C -0.131 4.131 6 H 0.087 0.913 7 C -0.055 4.055 8 N -0.377 5.377 9 C -0.063 4.063 10 N -0.253 5.253 11 C -0.067 4.067 12 C -0.007 4.007 13 C -0.561 4.561 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.919 -0.276 -15.027 15.058 hybrid contribution 1.125 1.359 -0.388 1.806 sum 0.206 1.083 -15.416 15.455 Atomic orbital electron populations 1.21667 0.94496 1.01941 1.00865 1.22509 0.95866 0.95851 0.90133 0.93538 1.22764 0.95654 1.00068 0.97151 1.22453 0.96502 0.96803 0.97297 0.91312 1.21763 0.90351 0.97749 0.95668 1.58633 1.03418 1.08884 1.66787 1.22690 0.91967 0.99620 0.92011 1.63628 1.29025 1.26694 1.05930 1.22475 0.97885 0.94276 0.92065 1.19058 0.97257 0.95063 0.89371 1.21177 1.47474 0.92956 0.94513 0.92983 1.24986 0.95613 0.94982 0.98694 1.69968 1.49178 1.11147 1.22873 0.86678 0.78761 0.80882 0.81768 1.20284 1.21283 1.20350 0.92480 0.93296 0.92233 0.90723 0.91733 0.90681 0.96093 0.84932 0.84937 0.92211 0.90807 0.96385 0.92470 0.95861 0.96472 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.59 37.16 0.36 -1.49 16 2 C 0.06 1.01 3.02 -66.19 -0.20 0.81 16 3 H 0.05 0.73 7.81 -51.93 -0.41 0.33 16 4 C -0.12 -1.50 5.94 -24.59 -0.15 -1.65 16 5 C -0.11 -1.52 3.10 -88.80 -0.28 -1.79 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.08 0.88 6.13 -3.83 -0.02 0.86 16 8 N -0.85 -9.59 9.54 -10.37 -0.10 -9.69 16 9 C 0.06 1.17 5.71 -2.83 -0.02 1.15 16 10 N -0.53 -10.17 4.82 -223.38 -1.08 -11.24 16 11 C 0.06 1.35 4.47 -3.82 -0.02 1.33 16 12 C 0.03 0.82 4.99 -27.88 -0.14 0.68 16 13 C -0.52 -15.33 9.11 -34.44 -0.31 -15.64 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 17 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 24 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.92 7.93 -51.93 -0.41 0.50 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.34 3.08 9.08 -39.29 -0.36 2.73 16 29 H 0.34 3.45 8.99 -39.29 -0.35 3.09 16 30 H 0.06 1.21 6.88 -51.93 -0.36 0.86 16 31 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 32 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 33 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.49 7.09 -51.93 -0.37 0.13 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 288.53 15.07 4.35 4.35 Total: -1.00 -31.32 288.53 -8.38 -39.70 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.40 Total: 0.75 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.87 Total: -14.11 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.44 Total: -47.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.32 -8.38 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126954616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.821 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds