Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.45984 * 2 1 4 4 C 1.54381 * 110.40590 * 122.41008 * 2 1 3 5 5 C 1.54267 * 105.05682 * 142.63303 * 4 2 1 6 6 H 1.09003 * 110.32171 * 241.10650 * 5 4 2 7 7 C 1.52990 * 110.32613 * 118.89503 * 5 4 2 8 8 N 1.46899 * 109.47369 * 177.90714 * 7 5 4 9 9 C 1.54381 * 105.05811 * 359.97438 * 5 4 2 10 10 N 1.48555 * 110.40879 * 237.58143 * 2 1 3 11 11 C 1.46896 * 110.99963 * 82.18606 * 10 2 1 12 12 C 1.53002 * 109.47246 * 185.28740 * 11 10 2 13 13 C 1.50706 * 109.46931 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99398 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 H 1.08999 * 109.47811 * 182.41864 * 1 2 3 22 22 H 1.09005 * 109.47197 * 302.41722 * 1 2 3 23 23 H 1.09002 * 109.46897 * 62.41536 * 1 2 3 24 24 H 1.08996 * 110.32743 * 23.73628 * 4 2 1 25 25 H 1.09000 * 110.32714 * 261.52480 * 4 2 1 26 26 H 1.08998 * 109.47274 * 297.91237 * 7 5 4 27 27 H 1.08998 * 109.47430 * 57.90960 * 7 5 4 28 28 H 1.00899 * 111.00242 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99994 * 303.95836 * 8 7 5 30 30 H 1.09004 * 110.40743 * 217.36987 * 9 5 4 31 31 H 1.09004 * 110.40918 * 94.93491 * 9 5 4 32 32 H 1.09004 * 109.47535 * 65.28888 * 11 10 2 33 33 H 1.09004 * 109.47041 * 305.28927 * 11 10 2 34 34 H 1.09000 * 109.46986 * 60.00111 * 12 11 10 35 35 H 1.08993 * 109.47662 * 299.99888 * 12 11 10 36 36 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0683 -0.7755 1.2215 5 6 3.3177 -1.5189 0.7055 6 1 3.1859 -2.5962 0.8067 7 6 4.5618 -1.0605 1.4688 8 7 5.7309 -1.8150 0.9979 9 6 3.4287 -1.1304 -0.7845 10 7 2.0480 -0.7464 -1.1753 11 6 2.0569 0.1011 -2.3751 12 6 2.4697 -0.7356 -3.5876 13 6 2.4781 0.1339 -4.8186 14 1 2.2157 1.1788 -4.7435 15 6 2.8209 -0.4048 -6.0406 16 7 2.8287 0.3540 -7.1147 17 14 3.2740 -2.2123 -6.1707 18 1 4.7366 -2.3717 -5.9695 19 1 2.5446 -2.9815 -5.1308 20 1 2.9010 -2.7207 -7.5152 21 1 -0.3635 -1.0267 0.0434 22 1 -0.3634 0.5509 0.8676 23 1 -0.3633 0.4759 -0.9109 24 1 1.3234 -1.4879 1.5760 25 1 2.3415 -0.0841 2.0187 26 1 4.7225 0.0037 1.2961 27 1 4.4201 -1.2382 2.5348 28 1 6.5662 -1.5301 1.4869 29 1 5.5801 -2.8087 1.0877 30 1 3.7685 -1.9814 -1.3748 31 1 4.1069 -0.2860 -0.9076 32 1 2.7664 0.9172 -2.2383 33 1 1.0597 0.5102 -2.5383 34 1 1.7602 -1.5517 -3.7245 35 1 3.4667 -1.1446 -3.4245 36 1 3.0702 -0.0248 -7.9744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126954842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = -11.763908 kcal Electronic energy + Delta-G solvation = -14553.085691 eV Core-core repulsion = 12264.262644 eV Total energy + Delta-G solvation = -2288.823047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.15695 -35.19353 -33.41936 -31.80007 -30.68846 -28.95904 -25.41304 -24.98439 -23.20927 -20.66948 -19.75515 -19.62665 -16.77229 -15.94717 -15.48305 -14.82274 -14.52417 -14.22689 -14.09592 -13.55385 -13.19090 -12.54733 -12.36402 -12.21680 -11.70908 -11.60141 -11.45523 -11.14518 -10.81298 -10.75741 -10.55275 -10.32452 -9.81452 -9.76214 -9.60715 -9.13464 -8.75470 -8.46284 -7.88990 -5.98171 -3.95695 3.38284 3.44740 3.52165 4.37010 4.45033 4.53031 4.78282 4.99418 5.06472 5.19510 5.36984 5.45049 5.53464 5.64409 5.76714 5.78303 5.88551 5.97801 6.10349 6.16870 6.22055 6.35513 6.43828 6.51221 6.53464 6.87452 7.01813 7.26350 7.30667 7.35235 7.59202 7.72166 7.93151 8.60037 9.06073 9.64956 11.15301 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.008095 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.761962 B = 3458.043187 C = 4052.916572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.113 4.113 5 C -0.094 4.094 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.849 5.849 9 C 0.055 3.945 10 N -0.513 5.513 11 C 0.062 3.938 12 C -0.005 4.005 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.263 1.263 20 H -0.289 1.289 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.339 0.661 29 H 0.340 0.660 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.011 0.989 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -3.791 18.754 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 H 0.064 0.936 4 C -0.152 4.152 5 C -0.113 4.113 6 H 0.092 0.908 7 C -0.060 4.060 8 N -0.378 5.378 9 C -0.073 4.073 10 N -0.238 5.238 11 C -0.066 4.066 12 C -0.043 4.043 13 C -0.558 4.558 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.187 1.187 20 H -0.215 1.215 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.029 0.971 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.450 -3.905 17.710 18.142 hybrid contribution 0.885 -0.456 0.856 1.313 sum 1.335 -4.362 18.566 19.118 Atomic orbital electron populations 1.21693 0.94260 1.02064 1.01184 1.22590 0.95925 0.95799 0.91058 0.93611 1.22383 0.96860 0.98852 0.97065 1.21942 0.93303 1.00168 0.95891 0.90793 1.21908 0.90234 0.98539 0.95350 1.58618 1.04997 1.09458 1.64727 1.22938 0.90141 1.00750 0.93492 1.65445 1.17858 1.37793 1.02694 1.22262 1.00283 0.94313 0.89700 1.19512 0.96029 0.96184 0.92567 1.21112 1.46206 0.97571 0.90929 0.91217 1.24991 0.94906 0.97824 0.95667 1.69923 1.49380 1.35960 0.99235 0.86761 0.79157 0.86042 0.77307 1.20339 1.18729 1.21500 0.92108 0.93043 0.92372 0.91151 0.91872 0.91125 0.95862 0.84897 0.84782 0.90261 0.93649 0.95571 0.91575 0.95848 0.97083 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.36 37.16 0.35 -1.45 16 2 C 0.06 0.81 2.89 -66.07 -0.19 0.62 16 3 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 4 C -0.11 -1.36 6.20 -25.34 -0.16 -1.52 16 5 C -0.09 -1.20 3.25 -89.24 -0.29 -1.49 16 6 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 7 C 0.07 0.77 5.89 -3.83 -0.02 0.75 16 8 N -0.85 -8.93 9.42 -10.38 -0.10 -9.03 16 9 C 0.05 0.92 5.09 -2.19 -0.01 0.91 16 10 N -0.51 -9.35 5.05 -222.16 -1.12 -10.48 16 11 C 0.06 1.33 4.69 -3.83 -0.02 1.31 16 12 C -0.01 -0.13 4.10 -27.88 -0.11 -0.25 16 13 C -0.52 -15.39 9.66 -34.44 -0.33 -15.72 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 17 Si 0.88 22.62 27.47 -169.99 -4.67 17.96 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 21 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.85 7.32 -51.93 -0.38 0.47 16 24 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 25 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 26 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.34 2.88 9.08 -39.29 -0.36 2.52 16 29 H 0.34 3.16 8.99 -39.29 -0.35 2.80 16 30 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 31 H 0.05 0.81 7.48 -51.93 -0.39 0.43 16 32 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 33 H 0.07 1.42 7.25 -51.93 -0.38 1.04 16 34 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 35 H 0.01 0.28 6.68 -51.93 -0.35 -0.07 16 36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -31.80 283.29 -8.03 -39.83 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.30 Total: 0.27 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.89 Total: -14.92 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.45 Total: -47.41 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.80 -8.03 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126954842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.067 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds