Wall clock time and date at job start Mon Mar 30 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.45984 * 2 1 4 4 C 1.54381 * 110.40590 * 122.41008 * 2 1 3 5 5 C 1.54267 * 105.05682 * 142.63303 * 4 2 1 6 6 H 1.09003 * 110.32171 * 241.10650 * 5 4 2 7 7 C 1.52990 * 110.32613 * 118.89503 * 5 4 2 8 8 N 1.46899 * 109.47369 * 177.90714 * 7 5 4 9 9 C 1.54381 * 105.05811 * 359.97438 * 5 4 2 10 10 N 1.48555 * 110.40879 * 237.58143 * 2 1 3 11 11 C 1.46896 * 110.99963 * 82.18606 * 10 2 1 12 12 C 1.53002 * 109.47246 * 185.28740 * 11 10 2 13 13 C 1.50706 * 109.46931 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99398 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 H 1.08999 * 109.47811 * 182.41864 * 1 2 3 22 22 H 1.09005 * 109.47197 * 302.41722 * 1 2 3 23 23 H 1.09002 * 109.46897 * 62.41536 * 1 2 3 24 24 H 1.08996 * 110.32743 * 23.73628 * 4 2 1 25 25 H 1.09000 * 110.32714 * 261.52480 * 4 2 1 26 26 H 1.08998 * 109.47274 * 297.91237 * 7 5 4 27 27 H 1.08998 * 109.47430 * 57.90960 * 7 5 4 28 28 H 1.00899 * 111.00242 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99994 * 303.95836 * 8 7 5 30 30 H 1.09004 * 110.40743 * 217.36987 * 9 5 4 31 31 H 1.09004 * 110.40918 * 94.93491 * 9 5 4 32 32 H 1.09004 * 109.47535 * 65.28888 * 11 10 2 33 33 H 1.09004 * 109.47041 * 305.28927 * 11 10 2 34 34 H 1.09000 * 109.46986 * 60.00111 * 12 11 10 35 35 H 1.08993 * 109.47662 * 299.99888 * 12 11 10 36 36 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0683 -0.7755 1.2215 5 6 3.3177 -1.5189 0.7055 6 1 3.1859 -2.5962 0.8067 7 6 4.5618 -1.0605 1.4688 8 7 5.7309 -1.8150 0.9979 9 6 3.4287 -1.1304 -0.7845 10 7 2.0480 -0.7464 -1.1753 11 6 2.0569 0.1011 -2.3751 12 6 2.4697 -0.7356 -3.5876 13 6 2.4781 0.1339 -4.8186 14 1 2.2157 1.1788 -4.7435 15 6 2.8209 -0.4048 -6.0406 16 7 2.8287 0.3540 -7.1147 17 14 3.2740 -2.2123 -6.1707 18 1 4.7366 -2.3717 -5.9695 19 1 2.5446 -2.9815 -5.1308 20 1 2.9010 -2.7207 -7.5152 21 1 -0.3635 -1.0267 0.0434 22 1 -0.3634 0.5509 0.8676 23 1 -0.3633 0.4759 -0.9109 24 1 1.3234 -1.4879 1.5760 25 1 2.3415 -0.0841 2.0187 26 1 4.7225 0.0037 1.2961 27 1 4.4201 -1.2382 2.5348 28 1 6.5662 -1.5301 1.4869 29 1 5.5801 -2.8087 1.0877 30 1 3.7685 -1.9814 -1.3748 31 1 4.1069 -0.2860 -0.9076 32 1 2.7664 0.9172 -2.2383 33 1 1.0597 0.5102 -2.5383 34 1 1.7602 -1.5517 -3.7245 35 1 3.4667 -1.1446 -3.4245 36 1 3.0702 -0.0248 -7.9744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126954842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:05 Heat of formation + Delta-G solvation = -36.090452 kcal Electronic energy + Delta-G solvation = -14554.140569 eV Core-core repulsion = 12264.262644 eV Total energy + Delta-G solvation = -2289.877925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39672 -36.39917 -35.24219 -33.60207 -31.76575 -30.69889 -26.72162 -26.37517 -24.68533 -22.21868 -21.22906 -20.82637 -18.96888 -17.00613 -16.62262 -16.32142 -15.92470 -15.79842 -15.25685 -15.10634 -14.66938 -14.33330 -13.84771 -13.46273 -13.16473 -12.97789 -12.86396 -12.54929 -12.46971 -11.93990 -11.81531 -11.69266 -11.59480 -11.45481 -11.40461 -11.31491 -10.77983 -9.53553 -9.35691 -8.32159 -6.36393 1.34274 1.35940 1.49879 2.35068 3.03194 3.10424 3.52341 3.70169 3.94655 4.09242 4.18149 4.39219 4.45041 4.48300 4.53164 4.65459 4.76465 4.77342 4.82916 4.89981 4.96305 5.04529 5.12499 5.25684 5.31655 5.36679 5.40984 5.46079 5.61015 6.06505 6.17531 6.27676 6.30258 6.65757 6.70484 7.28497 8.84614 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.008095 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.761962 B = 3458.043187 C = 4052.916572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.103 4.103 5 C -0.085 4.085 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.865 5.865 9 C 0.052 3.948 10 N -0.522 5.522 11 C 0.075 3.925 12 C 0.005 3.995 13 C -0.535 4.535 14 H 0.032 0.968 15 C 0.008 3.992 16 N -0.949 5.949 17 Si 0.951 3.049 18 H -0.267 1.267 19 H -0.251 1.251 20 H -0.279 1.279 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.350 0.650 29 H 0.347 0.653 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.011 0.989 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -5.520 21.081 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 H 0.058 0.942 4 C -0.142 4.142 5 C -0.105 4.105 6 H 0.100 0.900 7 C -0.055 4.055 8 N -0.396 5.396 9 C -0.076 4.076 10 N -0.247 5.247 11 C -0.053 4.053 12 C -0.033 4.033 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.175 1.175 20 H -0.204 1.204 21 H 0.081 0.919 22 H 0.099 0.901 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.030 0.970 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.598 -5.630 20.064 20.848 hybrid contribution 0.826 0.179 0.121 0.854 sum 1.424 -5.451 20.185 20.957 Atomic orbital electron populations 1.21688 0.93169 1.02424 1.01564 1.22772 0.96840 0.95643 0.90761 0.94189 1.22371 0.96543 0.99149 0.96121 1.21906 0.94829 1.00766 0.92965 0.90015 1.21819 0.89393 0.97910 0.96378 1.58588 1.05524 1.10090 1.65436 1.22938 0.88945 0.99306 0.96374 1.65392 1.18935 1.37499 1.02841 1.21926 0.99359 0.93729 0.90291 1.19350 0.95881 0.95654 0.92412 1.21418 1.46176 0.96627 0.93119 0.95006 1.25960 0.94661 1.03169 0.95097 1.70061 1.50442 1.38411 1.00036 0.85641 0.79397 0.79588 0.77951 1.19161 1.17457 1.20436 0.91941 0.90132 0.94331 0.89674 0.89434 0.92083 0.93264 0.83630 0.83970 0.92123 0.95336 0.96787 0.92179 0.96239 0.97025 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.36 71.98 0.67 -2.58 16 2 C 0.05 1.34 2.89 45.06 0.13 1.47 16 3 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 4 C -0.10 -2.14 6.20 31.49 0.20 -1.95 16 5 C -0.09 -1.96 3.25 -9.90 -0.03 -1.99 16 6 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 7 C 0.08 1.44 5.89 86.30 0.51 1.95 16 8 N -0.86 -16.34 9.42 -186.74 -1.76 -18.10 16 9 C 0.05 1.72 5.09 86.46 0.44 2.16 16 10 N -0.52 -18.71 5.05 -856.78 -4.33 -23.03 16 11 C 0.08 3.30 4.69 86.30 0.40 3.70 16 12 C 0.00 0.25 4.10 29.85 0.12 0.37 16 13 C -0.53 -32.68 9.66 25.60 0.25 -32.43 16 14 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 15 C 0.01 0.50 5.47 84.66 0.46 0.96 16 16 N -0.95 -61.38 13.96 21.45 0.30 -61.08 16 17 Si 0.95 46.69 27.47 68.60 1.88 48.57 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.25 -11.75 6.54 99.48 0.65 -11.09 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 22 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.04 1.09 7.32 -2.39 -0.02 1.07 16 24 H 0.08 1.56 7.82 -2.39 -0.02 1.54 16 25 H 0.09 1.44 7.71 -2.39 -0.02 1.42 16 26 H 0.06 1.28 8.05 -2.39 -0.02 1.27 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.35 5.19 9.08 -89.69 -0.81 4.37 16 29 H 0.35 5.63 8.99 -89.69 -0.81 4.82 16 30 H 0.06 2.19 7.77 -2.38 -0.02 2.17 16 31 H 0.03 1.02 7.48 -2.38 -0.02 1.01 16 32 H 0.01 0.63 7.88 -2.39 -0.02 0.61 16 33 H 0.06 2.66 7.25 -2.38 -0.02 2.64 16 34 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 35 H 0.01 0.58 6.68 -2.39 -0.02 0.57 16 36 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -69.56 283.29 -1.38 -70.94 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.63 Total: 11.05 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 3.15 Total: -28.35 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -5.79 Total: -102.21 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.88 Total: 48.57 kcal Total: -69.56 -1.38 -70.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126954842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.847 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds