Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.59619 * 2 1 4 4 C 1.54932 * 110.66642 * 123.00476 * 2 1 3 5 5 C 1.54591 * 102.92463 * 156.01737 * 4 2 1 6 6 H 1.08989 * 110.31183 * 96.95659 * 5 4 2 7 7 C 1.53003 * 110.31190 * 219.03064 * 5 4 2 8 8 N 1.46895 * 109.47474 * 184.99607 * 7 5 4 9 9 C 1.53999 * 105.13861 * 338.03878 * 5 4 2 10 10 N 1.47904 * 107.05611 * 358.77969 * 9 5 4 11 11 C 1.46896 * 110.99924 * 145.84319 * 10 9 5 12 12 C 1.52995 * 109.47580 * 52.60239 * 11 10 9 13 13 C 1.50698 * 109.47606 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00109 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00329 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99627 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47026 * 60.00404 * 17 15 13 19 19 H 1.48503 * 109.46976 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47554 * 300.00205 * 17 15 13 21 21 H 1.08994 * 109.46825 * 300.70483 * 1 2 3 22 22 H 1.09002 * 109.46925 * 60.70173 * 1 2 3 23 23 H 1.08996 * 109.46936 * 180.70020 * 1 2 3 24 24 H 1.08999 * 110.72905 * 274.37348 * 4 2 1 25 25 H 1.09002 * 110.72680 * 37.47631 * 4 2 1 26 26 H 1.09003 * 109.46603 * 305.00006 * 7 5 4 27 27 H 1.08999 * 109.47614 * 64.99365 * 7 5 4 28 28 H 1.00899 * 111.00191 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00075 * 303.95717 * 8 7 5 30 30 H 1.09000 * 109.91523 * 118.12611 * 9 5 4 31 31 H 1.08999 * 109.91840 * 239.22389 * 9 5 4 32 32 H 1.09003 * 109.47320 * 172.60015 * 11 10 9 33 33 H 1.09001 * 109.46929 * 292.60139 * 11 10 9 34 34 H 1.09009 * 109.47016 * 300.00121 * 12 11 10 35 35 H 1.08999 * 109.47488 * 59.99344 * 12 11 10 36 36 H 0.96996 * 120.00482 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 6 2.0768 -0.7896 1.2157 5 6 3.4869 -1.2148 0.7460 6 1 4.2368 -0.5191 1.1222 7 6 3.7981 -2.6363 1.2186 8 7 5.1829 -2.9773 0.8669 9 6 3.4317 -1.1609 -0.7921 10 7 2.0577 -0.7583 -1.1630 11 6 2.0615 0.0717 -2.3750 12 6 2.8337 -0.6469 -3.4831 13 6 2.8370 0.2043 -4.7266 14 1 2.3378 1.1621 -4.7267 15 6 3.4772 -0.2395 -5.8642 16 7 4.0846 -1.4059 -5.8644 17 14 3.4807 0.8155 -7.4058 18 1 4.1313 2.1179 -7.1128 19 1 4.2303 0.1180 -8.4813 20 1 2.0828 1.0492 -7.8489 21 1 -0.3633 0.5247 0.8836 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 -1.0276 0.0126 24 1 2.1403 -0.1488 2.0951 25 1 1.4560 -1.6620 1.4200 26 1 3.6726 -2.6953 2.2998 27 1 3.1174 -3.3372 0.7353 28 1 5.4131 -3.9121 1.1692 29 1 5.3420 -2.8676 -0.1233 30 1 4.1468 -0.4270 -1.1638 31 1 3.6588 -2.1432 -1.2065 32 1 1.0356 0.2444 -2.7003 33 1 2.5400 1.0271 -2.1595 34 1 3.8596 -0.8196 -3.1578 35 1 2.3553 -1.6024 -3.6986 36 1 4.5348 -1.7183 -6.6647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126955296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -15.901061 kcal Electronic energy + Delta-G solvation = -14558.088982 eV Core-core repulsion = 12269.086535 eV Total energy + Delta-G solvation = -2289.002447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.11848 -35.05275 -33.46318 -31.75097 -30.53827 -28.43026 -25.40674 -24.88351 -23.43817 -20.75265 -20.05500 -18.93322 -16.55458 -16.16941 -15.46947 -14.59267 -14.50052 -14.28123 -13.79683 -13.33571 -12.98651 -12.67904 -12.27453 -12.13194 -11.71114 -11.44858 -11.28307 -10.95695 -10.83197 -10.55502 -10.50910 -10.42875 -10.29511 -9.87197 -9.30271 -9.12676 -8.63341 -8.34665 -7.75212 -5.99532 -4.01887 3.33668 3.37847 3.40384 4.40695 4.52376 4.62529 4.88956 4.94832 5.20170 5.36423 5.41976 5.57212 5.63133 5.76350 5.79318 5.84088 6.01470 6.07707 6.13646 6.24429 6.33174 6.36393 6.47254 6.55610 6.57938 6.96637 7.18211 7.48302 7.53845 7.55429 7.75714 7.88067 8.07212 8.43946 9.04752 9.61696 11.11851 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.007422 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.776506 B = 3771.491226 C = 4451.263262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.047 0.953 4 C -0.111 4.111 5 C -0.101 4.101 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.855 5.855 9 C 0.048 3.952 10 N -0.514 5.514 11 C 0.054 3.946 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.337 0.663 29 H 0.346 0.654 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.022 0.978 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 -0.624 13.513 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.121 4.121 6 H 0.096 0.904 7 C -0.058 4.058 8 N -0.385 5.385 9 C -0.080 4.080 10 N -0.238 5.238 11 C -0.073 4.073 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.709 -0.589 13.743 14.020 hybrid contribution 0.169 0.531 -1.453 1.556 sum -2.539 -0.058 12.291 12.551 Atomic orbital electron populations 1.21633 0.94307 1.02103 1.00971 1.22752 0.95772 0.95659 0.91070 0.93548 1.22543 0.95556 0.99909 0.96987 1.22104 0.97074 0.96743 0.96140 0.90405 1.21792 0.88711 0.95493 0.99772 1.58775 1.24085 1.32410 1.23223 1.22793 0.90921 1.01369 0.92900 1.64817 1.18141 1.38080 1.02803 1.22481 1.00742 0.93979 0.90120 1.19143 0.94834 0.96032 0.91201 1.21160 1.34142 1.04185 0.96646 0.92850 1.24988 0.95393 0.95092 0.98796 1.69951 1.35391 1.19063 1.28893 0.86653 0.78149 0.80446 0.82721 1.20287 1.21255 1.20222 0.92991 0.92619 0.92092 0.91679 0.90917 0.91562 0.95011 0.85100 0.84078 0.93378 0.90920 0.91949 0.96204 0.96443 0.95924 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.49 37.16 0.35 -1.44 16 2 C 0.06 0.86 2.91 -65.79 -0.19 0.67 16 3 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 4 C -0.11 -1.44 6.04 -24.88 -0.15 -1.59 16 5 C -0.10 -1.42 3.22 -89.26 -0.29 -1.71 16 6 H 0.08 1.11 8.14 -51.94 -0.42 0.69 16 7 C 0.07 0.92 5.93 -3.83 -0.02 0.89 16 8 N -0.86 -10.54 9.62 -10.37 -0.10 -10.64 16 9 C 0.05 0.85 4.54 -2.75 -0.01 0.84 16 10 N -0.51 -9.62 5.10 -222.63 -1.13 -10.76 16 11 C 0.05 1.18 4.78 -3.83 -0.02 1.16 16 12 C 0.03 0.67 4.72 -27.89 -0.13 0.53 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.90 7.78 -51.93 -0.40 0.50 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.42 8.13 -51.93 -0.42 -0.01 16 28 H 0.34 3.43 9.08 -39.29 -0.36 3.07 16 29 H 0.35 4.55 7.86 -39.29 -0.31 4.24 16 30 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 31 H 0.07 1.35 7.02 -51.93 -0.36 0.98 16 32 H 0.06 1.36 7.76 -51.93 -0.40 0.96 16 33 H 0.02 0.43 7.89 -51.93 -0.41 0.02 16 34 H 0.02 0.48 6.63 -51.92 -0.34 0.14 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -30.17 284.83 -8.37 -38.54 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.27 Total: 2.43 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.87 Total: -14.39 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.50 Total: -47.71 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.17 -8.37 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126955296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.634 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds