Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.59619 * 2 1 4 4 C 1.54932 * 110.66642 * 123.00476 * 2 1 3 5 5 C 1.54591 * 102.92463 * 156.01737 * 4 2 1 6 6 H 1.08989 * 110.31183 * 96.95659 * 5 4 2 7 7 C 1.53003 * 110.31190 * 219.03064 * 5 4 2 8 8 N 1.46895 * 109.47474 * 184.99607 * 7 5 4 9 9 C 1.53999 * 105.13861 * 338.03878 * 5 4 2 10 10 N 1.47904 * 107.05611 * 358.77969 * 9 5 4 11 11 C 1.46896 * 110.99924 * 145.84319 * 10 9 5 12 12 C 1.52995 * 109.47580 * 52.60239 * 11 10 9 13 13 C 1.50698 * 109.47606 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99664 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00109 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00329 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99627 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47026 * 60.00404 * 17 15 13 19 19 H 1.48503 * 109.46976 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47554 * 300.00205 * 17 15 13 21 21 H 1.08994 * 109.46825 * 300.70483 * 1 2 3 22 22 H 1.09002 * 109.46925 * 60.70173 * 1 2 3 23 23 H 1.08996 * 109.46936 * 180.70020 * 1 2 3 24 24 H 1.08999 * 110.72905 * 274.37348 * 4 2 1 25 25 H 1.09002 * 110.72680 * 37.47631 * 4 2 1 26 26 H 1.09003 * 109.46603 * 305.00006 * 7 5 4 27 27 H 1.08999 * 109.47614 * 64.99365 * 7 5 4 28 28 H 1.00899 * 111.00191 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00075 * 303.95717 * 8 7 5 30 30 H 1.09000 * 109.91523 * 118.12611 * 9 5 4 31 31 H 1.08999 * 109.91840 * 239.22389 * 9 5 4 32 32 H 1.09003 * 109.47320 * 172.60015 * 11 10 9 33 33 H 1.09001 * 109.46929 * 292.60139 * 11 10 9 34 34 H 1.09009 * 109.47016 * 300.00121 * 12 11 10 35 35 H 1.08999 * 109.47488 * 59.99344 * 12 11 10 36 36 H 0.96996 * 120.00482 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9135 1.0203 0.0000 4 6 2.0768 -0.7896 1.2157 5 6 3.4869 -1.2148 0.7460 6 1 4.2368 -0.5191 1.1222 7 6 3.7981 -2.6363 1.2186 8 7 5.1829 -2.9773 0.8669 9 6 3.4317 -1.1609 -0.7921 10 7 2.0577 -0.7583 -1.1630 11 6 2.0615 0.0717 -2.3750 12 6 2.8337 -0.6469 -3.4831 13 6 2.8370 0.2043 -4.7266 14 1 2.3378 1.1621 -4.7267 15 6 3.4772 -0.2395 -5.8642 16 7 4.0846 -1.4059 -5.8644 17 14 3.4807 0.8155 -7.4058 18 1 4.1313 2.1179 -7.1128 19 1 4.2303 0.1180 -8.4813 20 1 2.0828 1.0492 -7.8489 21 1 -0.3633 0.5247 0.8836 22 1 -0.3633 0.5029 -0.8962 23 1 -0.3633 -1.0276 0.0126 24 1 2.1403 -0.1488 2.0951 25 1 1.4560 -1.6620 1.4200 26 1 3.6726 -2.6953 2.2998 27 1 3.1174 -3.3372 0.7353 28 1 5.4131 -3.9121 1.1692 29 1 5.3420 -2.8676 -0.1233 30 1 4.1468 -0.4270 -1.1638 31 1 3.6588 -2.1432 -1.2065 32 1 1.0356 0.2444 -2.7003 33 1 2.5400 1.0271 -2.1595 34 1 3.8596 -0.8196 -3.1578 35 1 2.3553 -1.6024 -3.6986 36 1 4.5348 -1.7183 -6.6647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126955296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = -38.075876 kcal Electronic energy + Delta-G solvation = -14559.050554 eV Core-core repulsion = 12269.086535 eV Total energy + Delta-G solvation = -2289.964019 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45334 -36.39545 -35.29485 -33.48352 -31.69708 -30.24773 -26.73821 -26.42092 -25.04986 -22.42431 -21.29432 -20.35742 -18.59051 -17.46047 -16.78412 -16.54956 -15.76814 -15.67000 -15.34011 -14.66498 -14.37312 -14.02958 -13.92523 -13.53563 -13.28277 -12.89964 -12.83528 -12.63659 -12.44532 -12.34914 -11.85047 -11.68763 -11.57737 -11.48035 -11.33118 -11.18492 -10.57958 -9.63392 -9.29524 -8.22803 -6.34760 1.38016 1.41511 1.49482 2.38289 3.10162 3.12420 3.53062 3.69992 3.77811 4.08740 4.24244 4.42469 4.45215 4.48118 4.56158 4.62034 4.73755 4.80294 4.85863 4.97690 4.98594 5.03692 5.14114 5.18430 5.34622 5.41283 5.43506 5.61231 5.75964 6.01225 6.15534 6.24275 6.30811 6.55700 6.81239 7.34376 8.89029 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033655 B = 0.007422 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.776506 B = 3771.491226 C = 4451.263262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.049 3.951 3 H 0.043 0.957 4 C -0.100 4.100 5 C -0.093 4.093 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.860 5.860 9 C 0.050 3.950 10 N -0.525 5.525 11 C 0.072 3.928 12 C 0.036 3.964 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.266 1.266 21 H 0.082 0.918 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.350 0.650 29 H 0.338 0.662 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.017 0.983 34 H -0.005 1.005 35 H -0.011 1.011 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 0.218 14.681 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 H 0.061 0.939 4 C -0.139 4.139 5 C -0.112 4.112 6 H 0.097 0.903 7 C -0.053 4.053 8 N -0.390 5.390 9 C -0.078 4.078 10 N -0.249 5.249 11 C -0.056 4.056 12 C -0.001 4.001 13 C -0.588 4.588 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.191 1.191 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.043 0.957 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.008 0.992 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.408 0.250 14.940 15.326 hybrid contribution 0.404 0.231 -1.790 1.849 sum -3.005 0.481 13.150 13.497 Atomic orbital electron populations 1.21623 0.92742 1.02356 1.01836 1.22951 0.97020 0.95456 0.90451 0.93860 1.22542 0.94230 1.00420 0.96673 1.22050 0.98225 0.98037 0.92898 0.90285 1.21775 0.88536 0.94103 1.00919 1.58802 1.24083 1.33499 1.22654 1.22733 0.89786 0.99438 0.95869 1.64775 1.18817 1.38173 1.03172 1.22108 0.99620 0.93515 0.90388 1.18944 0.93851 0.94776 0.92544 1.21594 1.34574 1.04753 0.97844 0.92322 1.25969 0.94648 0.96431 1.02510 1.70090 1.35976 1.20851 1.30056 0.85476 0.78700 0.78675 0.78049 1.19179 1.20592 1.19094 0.89878 0.93966 0.92185 0.88742 0.89856 0.89254 0.95721 0.83682 0.84973 0.96048 0.92725 0.91961 0.96509 0.98679 0.99215 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.49 71.98 0.68 -2.50 16 2 C 0.05 1.43 2.91 45.26 0.13 1.56 16 3 H 0.04 1.30 7.85 -2.39 -0.02 1.28 16 4 C -0.10 -2.30 6.04 31.80 0.19 -2.11 16 5 C -0.09 -2.48 3.22 -9.91 -0.03 -2.51 16 6 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 7 C 0.08 1.81 5.93 86.31 0.51 2.32 16 8 N -0.86 -20.51 9.62 -186.72 -1.80 -22.31 16 9 C 0.05 1.82 4.54 86.45 0.39 2.21 16 10 N -0.52 -19.87 5.10 -858.26 -4.37 -24.24 16 11 C 0.07 3.22 4.78 86.30 0.41 3.63 16 12 C 0.04 2.00 4.72 29.85 0.14 2.15 16 13 C -0.55 -32.33 9.11 25.60 0.23 -32.09 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.15 5.46 84.66 0.46 0.62 16 16 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.04 1.15 7.73 -2.39 -0.02 1.13 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.78 7.78 -2.39 -0.02 1.76 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.02 0.62 8.13 -2.39 -0.02 0.60 16 28 H 0.35 6.72 9.08 -89.69 -0.81 5.90 16 29 H 0.34 9.05 7.86 -89.70 -0.70 8.35 16 30 H 0.02 0.87 7.14 -2.39 -0.02 0.85 16 31 H 0.05 2.14 7.02 -2.39 -0.02 2.12 16 32 H 0.06 2.76 7.76 -2.39 -0.02 2.74 16 33 H 0.02 0.75 7.89 -2.39 -0.02 0.73 16 34 H -0.01 -0.30 6.63 -2.38 -0.02 -0.32 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.88 284.83 -1.20 -67.08 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.47 Total: 16.53 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.13 Total: -26.74 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -5.89 Total: -103.85 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.88 -1.20 -67.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126955296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.002 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds