Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46901 * 109.47055 * 239.99276 * 2 1 3 5 5 C 1.53011 * 109.47146 * 119.99684 * 2 1 3 6 6 H 1.08995 * 110.28349 * 60.67315 * 5 2 1 7 7 C 1.54257 * 110.32060 * 298.54393 * 5 2 1 8 8 C 1.54381 * 105.14978 * 241.05091 * 7 5 2 9 9 N 1.48720 * 104.51692 * 336.27274 * 8 7 5 10 10 C 1.46900 * 111.01831 * 158.96284 * 9 8 7 11 11 C 1.52999 * 109.46697 * 74.48907 * 10 9 8 12 12 C 1.50710 * 109.47025 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99558 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47036 * 89.99899 * 16 14 12 18 18 H 1.48507 * 109.46727 * 209.99625 * 16 14 12 19 19 H 1.48495 * 109.47485 * 329.99542 * 16 14 12 20 20 C 1.48567 * 104.28820 * 39.36098 * 9 8 7 21 21 H 1.09005 * 109.46746 * 300.00516 * 1 2 3 22 22 H 1.09000 * 109.47552 * 59.99974 * 1 2 3 23 23 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 24 24 H 1.00904 * 110.99915 * 176.04102 * 4 2 1 25 25 H 1.00896 * 111.00034 * 300.00646 * 4 2 1 26 26 H 1.09002 * 110.32715 * 0.02562 * 7 5 2 27 27 H 1.08998 * 110.32251 * 122.10673 * 7 5 2 28 28 H 1.09004 * 110.40867 * 94.98012 * 8 7 5 29 29 H 1.08996 * 110.41187 * 217.42234 * 8 7 5 30 30 H 1.08997 * 109.47620 * 194.49319 * 10 9 8 31 31 H 1.08999 * 109.47148 * 314.49752 * 10 9 8 32 32 H 1.09001 * 109.47808 * 300.00257 * 11 10 9 33 33 H 1.08997 * 109.47144 * 60.00574 * 11 10 9 34 34 H 0.96994 * 119.99819 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.41133 * 201.79165 * 20 9 8 36 36 H 1.09004 * 110.50861 * 79.40616 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6927 -1.1994 5 6 2.0400 -0.7212 1.2494 6 1 1.6938 -1.7547 1.2568 7 6 1.5669 0.0116 2.5216 8 6 2.8614 0.4443 3.2429 9 7 3.8975 -0.5009 2.7483 10 6 5.2459 0.0528 2.9307 11 6 5.6312 -0.0199 4.4096 12 6 7.0143 0.5487 4.5970 13 1 7.5637 0.9239 3.7462 14 6 7.5787 0.5889 5.8543 15 7 6.9099 0.1315 6.8902 16 14 9.2927 1.2943 6.0865 17 1 9.1960 2.7516 6.3546 18 1 9.9531 0.6224 7.2345 19 1 10.0916 1.0694 4.8551 20 6 3.5818 -0.6694 1.3064 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.0262 -0.6502 -1.2558 25 1 1.6960 -1.6480 -1.2226 26 1 0.9709 0.8848 2.2561 27 1 0.9885 -0.6622 3.1537 28 1 3.1221 1.4681 2.9744 29 1 2.7441 0.3517 4.3226 30 1 5.9584 -0.5238 2.3409 31 1 5.2594 1.0921 2.6025 32 1 4.9188 0.5567 4.9996 33 1 5.6178 -1.0592 4.7380 34 1 7.3068 0.1601 7.7748 35 1 4.0077 -1.5995 0.9302 36 1 3.9553 0.1784 0.7321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160598558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -16.568609 kcal Electronic energy + Delta-G solvation = -14343.829351 eV Core-core repulsion = 12054.797956 eV Total energy + Delta-G solvation = -2289.031394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21399 -35.86558 -33.29865 -31.52679 -29.49139 -28.34136 -27.83412 -24.33402 -22.13914 -21.53171 -20.27677 -19.34616 -16.43206 -16.35888 -15.51492 -15.23098 -14.47673 -14.09077 -13.79262 -13.39058 -13.21668 -12.66561 -12.29289 -11.96706 -11.90294 -11.51085 -11.26283 -11.16049 -10.94548 -10.83905 -10.76185 -10.53141 -10.42762 -9.80780 -9.38435 -9.13141 -8.75361 -8.33479 -7.89632 -5.99084 -4.01811 3.32030 3.38159 3.41536 4.34810 4.44833 4.52490 4.68331 4.94234 5.01302 5.23673 5.33483 5.36840 5.39711 5.54808 5.72948 5.77637 5.89790 5.91302 5.97346 6.08822 6.14003 6.20874 6.33877 6.44540 6.47356 6.95719 7.02798 7.31145 7.37142 7.48254 7.76325 7.89362 8.08476 8.43602 9.05543 9.61874 11.12353 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069197 B = 0.005514 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.544193 B = 5077.121514 C = 5304.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.093 3.907 3 H 0.078 0.922 4 N -0.845 5.845 5 C -0.125 4.125 6 H 0.075 0.925 7 C -0.117 4.117 8 C 0.036 3.964 9 N -0.509 5.509 10 C 0.052 3.948 11 C 0.031 3.969 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.034 3.966 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.342 0.658 25 H 0.338 0.662 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.015 0.985 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 -0.783 -11.787 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 H 0.096 0.904 4 N -0.374 5.374 5 C -0.146 4.146 6 H 0.093 0.907 7 C -0.156 4.156 8 C -0.093 4.093 9 N -0.233 5.233 10 C -0.075 4.075 11 C -0.007 4.007 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.095 4.095 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.150 0.850 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.525 -0.768 -11.727 16.460 hybrid contribution 1.609 0.511 0.556 1.778 sum -9.916 -0.257 -11.171 14.939 Atomic orbital electron populations 1.21828 0.94567 1.01891 1.01910 1.21546 0.95398 0.97927 0.87053 0.90391 1.59012 1.16480 1.21211 1.40657 1.22769 0.95654 1.00212 0.95996 0.90698 1.22369 0.97565 0.99794 0.95845 1.23106 0.91024 0.94359 1.00772 1.65493 1.03582 1.43017 1.11210 1.22501 0.87274 0.95778 1.01957 1.19022 0.95603 0.97797 0.88238 1.21204 1.01055 1.40589 0.93333 0.92846 1.24993 0.97723 0.95493 0.96070 1.69975 1.37576 1.46500 0.99184 0.86595 0.84548 0.79106 0.77751 1.20692 1.21167 1.19891 1.23125 0.94348 1.00364 0.91648 0.91937 0.92191 0.92889 0.84576 0.85021 0.91457 0.91353 0.94244 0.89923 0.92266 0.95943 0.96645 0.95794 0.92996 0.91078 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.25 37.15 0.34 -0.99 16 2 C 0.09 0.98 2.71 -67.71 -0.18 0.79 16 3 H 0.08 0.91 8.12 -51.93 -0.42 0.48 16 4 N -0.85 -8.31 9.19 -4.66 -0.04 -8.35 16 5 C -0.13 -1.52 2.80 -89.24 -0.25 -1.77 16 6 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.12 -1.52 6.10 -25.35 -0.15 -1.67 16 8 C 0.04 0.60 5.93 -2.09 -0.01 0.59 16 9 N -0.51 -9.52 5.34 -229.83 -1.23 -10.75 16 10 C 0.05 1.14 4.77 -3.82 -0.02 1.12 16 11 C 0.03 0.82 5.09 -27.88 -0.14 0.68 16 12 C -0.52 -15.08 9.11 -34.43 -0.31 -15.39 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.03 0.49 5.18 -2.18 -0.01 0.48 16 21 H 0.06 0.55 6.59 -51.93 -0.34 0.21 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.34 3.28 8.23 -39.29 -0.32 2.96 16 25 H 0.34 2.93 9.00 -39.29 -0.35 2.58 16 26 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 29 H 0.08 1.50 7.86 -51.93 -0.41 1.10 16 30 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 31 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.02 0.43 7.47 -51.93 -0.39 0.04 16 33 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.55 7.64 -51.93 -0.40 0.15 16 LS Contribution 284.99 15.07 4.29 4.29 Total: -1.00 -30.41 284.99 -8.37 -38.78 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.27 Total: 0.26 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.84 Total: -14.56 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.53 Total: -45.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.41 -8.37 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160598558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.212 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds