Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 N 1.46901 * 109.47055 * 239.99276 * 2 1 3 5 5 C 1.53011 * 109.47146 * 119.99684 * 2 1 3 6 6 H 1.08995 * 110.28349 * 60.67315 * 5 2 1 7 7 C 1.54257 * 110.32060 * 298.54393 * 5 2 1 8 8 C 1.54381 * 105.14978 * 241.05091 * 7 5 2 9 9 N 1.48720 * 104.51692 * 336.27274 * 8 7 5 10 10 C 1.46900 * 111.01831 * 158.96284 * 9 8 7 11 11 C 1.52999 * 109.46697 * 74.48907 * 10 9 8 12 12 C 1.50710 * 109.47025 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99558 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47036 * 89.99899 * 16 14 12 18 18 H 1.48507 * 109.46727 * 209.99625 * 16 14 12 19 19 H 1.48495 * 109.47485 * 329.99542 * 16 14 12 20 20 C 1.48567 * 104.28820 * 39.36098 * 9 8 7 21 21 H 1.09005 * 109.46746 * 300.00516 * 1 2 3 22 22 H 1.09000 * 109.47552 * 59.99974 * 1 2 3 23 23 H 1.09004 * 109.47360 * 180.02562 * 1 2 3 24 24 H 1.00904 * 110.99915 * 176.04102 * 4 2 1 25 25 H 1.00896 * 111.00034 * 300.00646 * 4 2 1 26 26 H 1.09002 * 110.32715 * 0.02562 * 7 5 2 27 27 H 1.08998 * 110.32251 * 122.10673 * 7 5 2 28 28 H 1.09004 * 110.40867 * 94.98012 * 8 7 5 29 29 H 1.08996 * 110.41187 * 217.42234 * 8 7 5 30 30 H 1.08997 * 109.47620 * 194.49319 * 10 9 8 31 31 H 1.08999 * 109.47148 * 314.49752 * 10 9 8 32 32 H 1.09001 * 109.47808 * 300.00257 * 11 10 9 33 33 H 1.08997 * 109.47144 * 60.00574 * 11 10 9 34 34 H 0.96994 * 119.99819 * 180.02562 * 15 14 12 35 35 H 1.08999 * 110.41133 * 201.79165 * 20 9 8 36 36 H 1.09004 * 110.50861 * 79.40616 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6927 -1.1994 5 6 2.0400 -0.7212 1.2494 6 1 1.6938 -1.7547 1.2568 7 6 1.5669 0.0116 2.5216 8 6 2.8614 0.4443 3.2429 9 7 3.8975 -0.5009 2.7483 10 6 5.2459 0.0528 2.9307 11 6 5.6312 -0.0199 4.4096 12 6 7.0143 0.5487 4.5970 13 1 7.5637 0.9239 3.7462 14 6 7.5787 0.5889 5.8543 15 7 6.9099 0.1315 6.8902 16 14 9.2927 1.2943 6.0865 17 1 9.1960 2.7516 6.3546 18 1 9.9531 0.6224 7.2345 19 1 10.0916 1.0694 4.8551 20 6 3.5818 -0.6694 1.3064 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.0262 -0.6502 -1.2558 25 1 1.6960 -1.6480 -1.2226 26 1 0.9709 0.8848 2.2561 27 1 0.9885 -0.6622 3.1537 28 1 3.1221 1.4681 2.9744 29 1 2.7441 0.3517 4.3226 30 1 5.9584 -0.5238 2.3409 31 1 5.2594 1.0921 2.6025 32 1 4.9188 0.5567 4.9996 33 1 5.6178 -1.0592 4.7380 34 1 7.3068 0.1601 7.7748 35 1 4.0077 -1.5995 0.9302 36 1 3.9553 0.1784 0.7321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160598558.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -38.982840 kcal Electronic energy + Delta-G solvation = -14344.801305 eV Core-core repulsion = 12054.797956 eV Total energy + Delta-G solvation = -2290.003348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41238 -37.07351 -35.27578 -33.11456 -30.82754 -29.43628 -29.19569 -26.24291 -23.23461 -23.10656 -21.72100 -20.53987 -18.59324 -17.31621 -16.69216 -16.60425 -16.34619 -15.55331 -14.91731 -14.71803 -14.47966 -14.07905 -13.87010 -13.50830 -13.06893 -12.99872 -12.78182 -12.50231 -12.35470 -12.21216 -12.18604 -11.82239 -11.70122 -11.49797 -11.37209 -11.21435 -10.57912 -9.58234 -9.38422 -8.22529 -6.34923 1.38663 1.40600 1.51837 2.38554 3.10690 3.12047 3.55112 3.64191 3.89715 3.93768 4.21633 4.35934 4.39553 4.42647 4.50099 4.58048 4.68880 4.75176 4.88087 4.95171 5.01709 5.06067 5.09957 5.19959 5.35602 5.38469 5.42172 5.58306 5.74975 5.99257 6.10578 6.26133 6.27373 6.60761 6.82031 7.34678 8.89855 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069197 B = 0.005514 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.544193 B = 5077.121514 C = 5304.151481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.100 3.900 3 H 0.069 0.931 4 N -0.847 5.847 5 C -0.113 4.113 6 H 0.082 0.918 7 C -0.108 4.108 8 C 0.031 3.969 9 N -0.529 5.529 10 C 0.070 3.930 11 C 0.040 3.960 12 C -0.548 4.548 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.262 1.262 20 C 0.035 3.965 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.343 0.657 25 H 0.346 0.654 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.023 0.977 32 H -0.011 1.011 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 -0.450 -13.229 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 H 0.087 0.913 4 N -0.376 5.376 5 C -0.134 4.134 6 H 0.100 0.900 7 C -0.146 4.146 8 C -0.097 4.097 9 N -0.253 5.253 10 C -0.058 4.058 11 C 0.002 3.998 12 C -0.586 4.586 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.186 1.186 20 C -0.093 4.093 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.155 0.845 25 H 0.159 0.841 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.681 -0.442 -13.194 17.627 hybrid contribution 1.614 0.377 1.013 1.943 sum -10.066 -0.065 -12.181 15.802 Atomic orbital electron populations 1.21804 0.93297 1.02488 1.02301 1.21467 0.96297 0.97195 0.86288 0.91272 1.59013 1.16667 1.21863 1.40013 1.22731 0.93496 1.00818 0.96395 0.89953 1.22345 0.95594 1.00903 0.95802 1.23132 0.92711 0.94000 0.99898 1.65380 1.02303 1.43251 1.14378 1.22116 0.89432 0.96045 0.98252 1.18843 0.94711 0.94916 0.91329 1.21628 1.02047 1.40964 0.93950 0.92170 1.25994 1.02448 0.95597 0.95607 1.70116 1.39764 1.47523 0.99816 0.85397 0.78751 0.78492 0.78093 1.19648 1.20579 1.18644 1.23199 0.96456 1.00783 0.88887 0.91373 0.92010 0.92201 0.84451 0.84113 0.89256 0.90796 0.94662 0.92353 0.92057 0.95908 0.99254 0.99169 0.92684 0.90445 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.25 71.98 0.67 -1.54 16 2 C 0.10 1.85 2.71 44.92 0.12 1.97 16 3 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 4 N -0.85 -14.56 9.19 -168.67 -1.55 -16.11 16 5 C -0.11 -2.50 2.80 -9.90 -0.03 -2.53 16 6 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 7 C -0.11 -2.62 6.10 31.49 0.19 -2.42 16 8 C 0.03 1.04 5.93 86.42 0.51 1.56 16 9 N -0.53 -19.88 5.34 -881.04 -4.70 -24.58 16 10 C 0.07 3.08 4.77 86.30 0.41 3.49 16 11 C 0.04 2.20 5.09 29.85 0.15 2.35 16 12 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 16 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 20 C 0.03 0.97 5.18 86.45 0.45 1.42 16 21 H 0.07 0.99 6.59 -2.38 -0.02 0.97 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.34 5.84 8.23 -89.69 -0.74 5.10 16 25 H 0.35 5.08 9.00 -89.70 -0.81 4.27 16 26 H 0.09 1.79 6.50 -2.39 -0.02 1.78 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.21 7.75 -2.38 -0.02 1.19 16 29 H 0.06 2.22 7.86 -2.39 -0.02 2.21 16 30 H 0.06 2.65 8.08 -2.39 -0.02 2.63 16 31 H 0.02 0.99 7.77 -2.39 -0.02 0.98 16 32 H -0.01 -0.65 7.47 -2.39 -0.02 -0.67 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.15 7.64 -2.39 -0.02 1.13 16 Total: -1.00 -65.95 284.99 -1.26 -67.21 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.50 Total: 11.44 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.17 Total: -27.02 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -5.97 Total: -98.47 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.95 -1.26 -67.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160598558.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.228 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds