Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47513 * 2 1 4 4 N 1.46910 * 109.47148 * 119.99826 * 2 1 3 5 5 C 1.53002 * 109.47032 * 239.99333 * 2 1 3 6 6 H 1.08994 * 110.62420 * 56.90087 * 5 2 1 7 7 C 1.55132 * 110.85962 * 293.68771 * 5 2 1 8 8 C 1.54904 * 101.65826 * 205.89245 * 7 5 2 9 9 N 1.47848 * 104.79354 * 37.07039 * 8 7 5 10 10 C 1.46893 * 110.99982 * 213.63779 * 9 8 7 11 11 C 1.53004 * 109.47282 * 290.84225 * 10 9 8 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.47445 * 108.56442 * 335.90608 * 9 8 7 21 21 H 1.09006 * 109.47387 * 300.00616 * 1 2 3 22 22 H 1.08998 * 109.46970 * 60.00017 * 1 2 3 23 23 H 1.08995 * 109.47885 * 180.02562 * 1 2 3 24 24 H 1.00898 * 111.00002 * 176.04054 * 4 2 1 25 25 H 1.00895 * 110.99879 * 300.00039 * 4 2 1 26 26 H 1.09002 * 110.99640 * 323.98764 * 7 5 2 27 27 H 1.08999 * 110.98900 * 87.76470 * 7 5 2 28 28 H 1.09002 * 110.37373 * 278.24338 * 8 7 5 29 29 H 1.08997 * 110.37558 * 155.89580 * 8 7 5 30 30 H 1.09000 * 109.47487 * 170.84192 * 10 9 8 31 31 H 1.08998 * 109.47524 * 50.84232 * 10 9 8 32 32 H 1.08994 * 109.47074 * 60.00280 * 11 10 9 33 33 H 1.08998 * 109.47285 * 300.00116 * 11 10 9 34 34 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 35 35 H 1.09001 * 109.88966 * 120.39794 * 20 9 8 36 36 H 1.09006 * 109.88665 * 241.41557 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0399 -0.7214 -1.2492 6 1 1.6427 -0.2553 -2.1508 7 6 1.6749 -2.2285 -1.2044 8 6 2.7824 -2.8454 -2.0946 9 7 3.9959 -2.0588 -1.7869 10 6 4.8497 -1.9219 -2.9743 11 6 5.4585 -3.2813 -3.3243 12 6 6.3339 -3.1409 -4.5429 13 1 6.4452 -2.1783 -5.0198 14 6 6.9926 -4.2413 -5.0490 15 7 6.8566 -5.4136 -4.4685 16 14 8.0783 -4.0672 -6.5591 17 1 8.6690 -5.3866 -6.8988 18 1 7.2634 -3.5804 -7.7011 19 1 9.1660 -3.0962 -6.2775 20 6 3.5827 -0.7381 -1.2780 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3635 -1.0276 0.0005 24 1 3.0261 -0.7627 1.1910 25 1 1.6961 -0.2350 2.0386 26 1 1.7322 -2.6142 -0.1865 27 1 0.6874 -2.4039 -1.6311 28 1 2.5222 -2.7449 -3.1483 29 1 2.9349 -3.8939 -1.8387 30 1 5.6477 -1.2087 -2.7678 31 1 4.2516 -1.5650 -3.8127 32 1 4.6605 -3.9944 -3.5309 33 1 6.0567 -3.6382 -2.4859 34 1 6.2931 -5.5039 -3.6841 35 1 3.9740 -0.5894 -0.2715 36 1 3.9523 0.0461 -1.9388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160598696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = -37.776916 kcal Electronic energy + Delta-G solvation = -14440.960008 eV Core-core repulsion = 12151.008953 eV Total energy + Delta-G solvation = -2289.951056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48591 -37.14624 -35.53106 -32.86882 -30.50001 -29.91424 -29.06541 -25.96282 -23.53647 -23.40404 -21.55475 -20.31530 -18.94185 -17.41152 -16.92887 -16.20243 -15.74958 -15.64089 -15.38122 -14.99283 -14.54997 -14.16559 -13.69584 -13.42737 -13.27794 -13.01903 -12.78177 -12.65381 -12.36303 -12.02571 -11.94338 -11.85109 -11.69924 -11.59176 -11.40772 -10.73115 -10.55902 -9.50251 -9.25055 -8.71910 -6.42297 1.51522 1.60851 1.80397 2.55559 3.07700 3.14444 3.49625 3.64437 3.74688 3.96958 4.26130 4.27279 4.34008 4.41703 4.43301 4.50378 4.64647 4.70089 4.85787 4.94175 5.01324 5.03658 5.06516 5.11491 5.22479 5.36985 5.38348 5.47227 5.85935 6.11591 6.13806 6.20558 6.30861 6.54340 6.65780 7.41215 8.69047 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.076050 B = 0.005516 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.088860 B = 5074.878990 C = 5146.047552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 H 0.041 0.959 4 N -0.850 5.850 5 C -0.099 4.099 6 H 0.077 0.923 7 C -0.101 4.101 8 C 0.041 3.959 9 N -0.543 5.543 10 C 0.082 3.918 11 C 0.023 3.977 12 C -0.623 4.623 13 H 0.051 0.949 14 C -0.038 4.038 15 N -0.935 5.935 16 Si 1.121 2.879 17 H -0.282 1.282 18 H -0.268 1.268 19 H -0.267 1.267 20 C 0.045 3.955 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.342 0.658 25 H 0.349 0.651 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.019 0.981 32 H -0.014 1.014 33 H -0.013 1.013 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 12.491 8.436 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.008 4.008 3 H 0.059 0.941 4 N -0.384 5.384 5 C -0.118 4.118 6 H 0.096 0.904 7 C -0.139 4.139 8 C -0.087 4.087 9 N -0.267 5.267 10 C -0.046 4.046 11 C -0.015 4.015 12 C -0.661 4.661 13 H 0.069 0.931 14 C -0.235 4.235 15 N -0.573 5.573 16 Si 0.941 3.059 17 H -0.207 1.207 18 H -0.193 1.193 19 H -0.192 1.192 20 C -0.083 4.083 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.157 0.843 25 H 0.163 0.837 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.004 0.996 33 H 0.006 0.994 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.126 10.798 7.528 17.235 hybrid contribution -0.753 1.750 0.615 2.002 sum -11.879 12.548 8.144 19.102 Atomic orbital electron populations 1.21786 0.93449 1.02451 1.02212 1.21102 0.96020 0.94320 0.89318 0.94086 1.58731 1.16844 1.58572 1.04249 1.22450 0.94164 0.96620 0.98609 0.90435 1.22609 0.96681 0.94040 1.00574 1.23017 0.89836 0.98090 0.97707 1.63519 1.17180 1.15152 1.30840 1.22026 0.95129 0.97839 0.89567 1.19041 0.94215 0.93452 0.94784 1.22453 1.31650 0.97624 1.14414 0.93072 1.27533 0.99000 0.91878 1.05125 1.70909 1.38935 1.25783 1.21627 0.82904 0.74880 0.76321 0.71768 1.20715 1.19307 1.19237 1.22934 0.95270 0.89638 1.00472 0.91714 0.91760 0.92380 0.84266 0.83743 0.89182 0.90234 0.95336 0.92511 0.92144 0.96313 0.99554 0.99425 0.93685 0.90157 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.33 71.98 0.67 -1.51 16 2 C 0.10 1.88 3.22 44.91 0.14 2.03 16 3 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 4 N -0.85 -15.29 8.09 -168.67 -1.37 -16.66 16 5 C -0.10 -2.34 2.81 -9.62 -0.03 -2.36 16 6 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 7 C -0.10 -2.69 5.62 31.98 0.18 -2.51 16 8 C 0.04 1.48 5.78 86.77 0.50 1.98 16 9 N -0.54 -20.78 5.16 -885.54 -4.57 -25.35 16 10 C 0.08 3.73 4.50 86.31 0.39 4.12 16 11 C 0.02 1.26 4.33 29.85 0.13 1.39 16 12 C -0.62 -37.27 9.11 25.60 0.23 -37.04 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 14 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 15 N -0.94 -60.31 13.65 21.45 0.29 -60.01 16 16 Si 1.12 51.39 29.90 68.60 2.05 53.44 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 C 0.04 1.30 6.32 86.65 0.55 1.85 16 21 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 23 H 0.06 1.00 7.49 -2.39 -0.02 0.98 16 24 H 0.34 6.63 6.88 -89.70 -0.62 6.01 16 25 H 0.35 4.77 9.04 -89.70 -0.81 3.96 16 26 H 0.09 2.47 7.10 -2.39 -0.02 2.45 16 27 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 28 H 0.03 1.08 7.62 -2.39 -0.02 1.06 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 31 H 0.02 0.85 7.85 -2.39 -0.02 0.83 16 32 H -0.01 -0.82 7.36 -2.39 -0.02 -0.84 16 33 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 34 H 0.25 16.75 7.22 -92.70 -0.67 16.08 16 35 H 0.08 2.13 5.93 -2.39 -0.01 2.12 16 36 H 0.05 1.38 7.55 -2.38 -0.02 1.37 16 Total: -1.00 -68.19 281.26 -0.64 -68.82 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -0.28 Total: 13.63 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.23 Total: -33.88 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -5.64 Total: -102.02 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -68.19 -0.64 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160598696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.045 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds