Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47022 * 2 1 4 4 N 1.46900 * 109.47103 * 240.00297 * 2 1 3 5 5 C 1.52994 * 109.47311 * 119.99911 * 2 1 3 6 6 H 1.09005 * 110.64065 * 61.23746 * 5 2 1 7 7 C 1.54602 * 110.72522 * 184.38116 * 5 2 1 8 8 C 1.53991 * 105.13757 * 140.49511 * 7 5 2 9 9 N 1.47904 * 107.06085 * 1.22922 * 8 7 5 10 10 C 1.46900 * 110.99960 * 214.15388 * 9 8 7 11 11 C 1.53003 * 109.46983 * 175.60050 * 10 9 8 12 12 C 1.50691 * 109.47185 * 174.78322 * 11 10 9 13 13 H 1.08001 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00276 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99622 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47122 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47080 * 119.99979 * 16 14 12 19 19 H 1.48499 * 109.47179 * 240.00239 * 16 14 12 20 20 C 1.48535 * 105.81970 * 334.66763 * 9 8 7 21 21 H 1.09000 * 109.46901 * 299.99516 * 1 2 3 22 22 H 1.08998 * 109.47204 * 59.99616 * 1 2 3 23 23 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 24 24 H 1.00906 * 110.99886 * 174.16990 * 4 2 1 25 25 H 1.00900 * 111.00367 * 298.12400 * 4 2 1 26 26 H 1.09000 * 110.30338 * 21.58370 * 7 5 2 27 27 H 1.08994 * 110.31309 * 259.41621 * 7 5 2 28 28 H 1.08999 * 109.91817 * 241.87538 * 8 7 5 29 29 H 1.08999 * 109.91870 * 120.58186 * 8 7 5 30 30 H 1.09003 * 109.47109 * 55.60608 * 10 9 8 31 31 H 1.08998 * 109.46899 * 295.60132 * 10 9 8 32 32 H 1.09003 * 109.47038 * 294.78729 * 11 10 9 33 33 H 1.09002 * 109.47160 * 54.78277 * 11 10 9 34 34 H 0.96994 * 119.99673 * 179.97438 * 15 14 12 35 35 H 1.08994 * 110.66765 * 157.64051 * 20 9 8 36 36 H 1.09002 * 110.66742 * 280.77735 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7212 1.2492 6 1 1.7053 -1.7586 1.2575 7 6 3.5817 -0.6431 1.3349 8 6 3.8906 -0.4183 2.8266 9 7 2.5954 -0.4030 3.5405 10 6 2.6288 0.5334 4.6719 11 6 1.2431 0.6036 5.3169 12 6 1.3074 1.4635 6.5527 13 1 2.2428 1.9151 6.8485 14 6 0.1718 1.6737 7.3062 15 7 -0.9674 1.1242 6.9458 16 14 0.2513 2.7401 8.8377 17 1 1.6380 3.2382 9.0227 18 1 -0.6723 3.8931 8.6865 19 1 -0.1488 1.9373 10.0212 20 6 1.5838 0.0125 2.5353 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0237 -0.6238 -1.2720 25 1 1.7215 -1.6564 -1.2076 26 1 3.9516 0.1932 0.7417 27 1 4.0274 -1.5771 0.9928 28 1 4.3997 0.5361 2.9607 29 1 4.5127 -1.2301 3.2035 30 1 2.9144 1.5233 4.3159 31 1 3.3551 0.1883 5.4078 32 1 0.5348 1.0358 4.6100 33 1 0.9178 -0.4004 5.5893 34 1 -1.7661 1.2718 7.4760 35 1 0.5881 -0.3161 2.8330 36 1 1.6065 1.0926 2.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160598838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = -17.613153 kcal Electronic energy + Delta-G solvation = -14454.674366 eV Core-core repulsion = 12165.597677 eV Total energy + Delta-G solvation = -2289.076689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15166 -35.85751 -33.33148 -31.41753 -29.67981 -28.28771 -27.54783 -24.40046 -22.47315 -21.03110 -19.94505 -19.75258 -16.54238 -16.10619 -15.37298 -15.22411 -14.45095 -14.36940 -13.52083 -13.43349 -13.08714 -12.64001 -12.17989 -12.03850 -11.89628 -11.57689 -11.19803 -11.02772 -10.94114 -10.85412 -10.60184 -10.51024 -10.39213 -9.90606 -9.35252 -9.11562 -8.73603 -8.35328 -7.81423 -6.00183 -4.02517 3.30986 3.38313 3.42409 4.38950 4.46539 4.54895 4.77135 4.92646 5.01229 5.30075 5.35947 5.39718 5.49591 5.64271 5.78741 5.86924 5.92855 5.99422 6.10323 6.14376 6.22929 6.27785 6.40915 6.42714 6.51275 6.93813 7.06790 7.35863 7.45567 7.49645 7.73621 7.88227 8.06527 8.42905 9.04628 9.61268 11.11371 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047046 B = 0.006333 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.024492 B = 4420.418577 C = 4853.008730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.095 3.905 3 H 0.078 0.922 4 N -0.844 5.844 5 C -0.127 4.127 6 H 0.079 0.921 7 C -0.126 4.126 8 C 0.034 3.966 9 N -0.519 5.519 10 C 0.054 3.946 11 C 0.026 3.974 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.052 3.948 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.338 0.662 25 H 0.338 0.662 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -3.290 -12.912 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 H 0.096 0.904 4 N -0.372 5.372 5 C -0.148 4.148 6 H 0.097 0.903 7 C -0.164 4.164 8 C -0.094 4.094 9 N -0.243 5.243 10 C -0.073 4.073 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.077 4.077 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.150 0.850 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.597 -3.271 -13.045 14.567 hybrid contribution 0.738 0.776 1.375 1.743 sum 6.335 -2.495 -11.670 13.511 Atomic orbital electron populations 1.21815 0.94221 1.02064 1.02228 1.21464 0.95831 0.97653 0.86709 0.90421 1.59031 1.17176 1.20163 1.40821 1.23006 0.95062 1.00647 0.96123 0.90304 1.22452 0.95994 1.01178 0.96814 1.22822 0.93554 1.00296 0.92733 1.64866 1.02918 1.49096 1.07447 1.22507 1.02177 0.91290 0.91352 1.19109 0.89577 0.97581 0.94856 1.21228 0.95133 1.30235 1.09407 0.92742 1.24997 0.95465 0.96021 0.97833 1.69981 0.99721 1.44346 1.39240 0.86537 0.78045 0.80278 0.83142 1.19770 1.21017 1.20954 1.23129 0.97511 0.97313 0.89712 0.91520 0.92263 0.92807 0.85024 0.85017 0.91907 0.91768 0.94306 0.91101 0.96236 0.91938 0.96601 0.95683 0.93044 0.89725 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.30 37.16 0.35 -1.38 16 2 C 0.10 1.11 2.82 -67.72 -0.19 0.92 16 3 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 4 N -0.84 -8.41 9.19 -4.67 -0.04 -8.45 16 5 C -0.13 -1.66 2.76 -88.76 -0.24 -1.91 16 6 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.13 -1.53 5.80 -25.37 -0.15 -1.68 16 8 C 0.03 0.52 6.70 -2.75 -0.02 0.50 16 9 N -0.52 -9.76 5.35 -230.45 -1.23 -10.99 16 10 C 0.05 1.18 4.78 -3.82 -0.02 1.16 16 11 C 0.03 0.69 4.65 -27.89 -0.13 0.56 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.05 0.89 3.79 -1.90 -0.01 0.88 16 21 H 0.07 0.86 7.28 -51.93 -0.38 0.48 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.34 2.98 8.37 -39.29 -0.33 2.65 16 25 H 0.34 3.05 8.99 -39.29 -0.35 2.69 16 26 H 0.06 0.70 7.78 -51.93 -0.40 0.30 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.42 7.97 -51.93 -0.41 0.01 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.02 0.43 7.18 -51.93 -0.37 0.06 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 36 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -30.15 285.83 -8.46 -38.61 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.38 Total: 0.73 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.82 Total: -14.65 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.54 Total: -45.79 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.15 -8.46 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160598838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.993 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds