Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47022 * 2 1 4 4 N 1.46900 * 109.47103 * 240.00297 * 2 1 3 5 5 C 1.52994 * 109.47311 * 119.99911 * 2 1 3 6 6 H 1.09005 * 110.64065 * 61.23746 * 5 2 1 7 7 C 1.54602 * 110.72522 * 184.38116 * 5 2 1 8 8 C 1.53991 * 105.13757 * 140.49511 * 7 5 2 9 9 N 1.47904 * 107.06085 * 1.22922 * 8 7 5 10 10 C 1.46900 * 110.99960 * 214.15388 * 9 8 7 11 11 C 1.53003 * 109.46983 * 175.60050 * 10 9 8 12 12 C 1.50691 * 109.47185 * 174.78322 * 11 10 9 13 13 H 1.08001 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00276 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99622 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47122 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47080 * 119.99979 * 16 14 12 19 19 H 1.48499 * 109.47179 * 240.00239 * 16 14 12 20 20 C 1.48535 * 105.81970 * 334.66763 * 9 8 7 21 21 H 1.09000 * 109.46901 * 299.99516 * 1 2 3 22 22 H 1.08998 * 109.47204 * 59.99616 * 1 2 3 23 23 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 24 24 H 1.00906 * 110.99886 * 174.16990 * 4 2 1 25 25 H 1.00900 * 111.00367 * 298.12400 * 4 2 1 26 26 H 1.09000 * 110.30338 * 21.58370 * 7 5 2 27 27 H 1.08994 * 110.31309 * 259.41621 * 7 5 2 28 28 H 1.08999 * 109.91817 * 241.87538 * 8 7 5 29 29 H 1.08999 * 109.91870 * 120.58186 * 8 7 5 30 30 H 1.09003 * 109.47109 * 55.60608 * 10 9 8 31 31 H 1.08998 * 109.46899 * 295.60132 * 10 9 8 32 32 H 1.09003 * 109.47038 * 294.78729 * 11 10 9 33 33 H 1.09002 * 109.47160 * 54.78277 * 11 10 9 34 34 H 0.96994 * 119.99673 * 179.97438 * 15 14 12 35 35 H 1.08994 * 110.66765 * 157.64051 * 20 9 8 36 36 H 1.09002 * 110.66742 * 280.77735 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0400 -0.7212 1.2492 6 1 1.7053 -1.7586 1.2575 7 6 3.5817 -0.6431 1.3349 8 6 3.8906 -0.4183 2.8266 9 7 2.5954 -0.4030 3.5405 10 6 2.6288 0.5334 4.6719 11 6 1.2431 0.6036 5.3169 12 6 1.3074 1.4635 6.5527 13 1 2.2428 1.9151 6.8485 14 6 0.1718 1.6737 7.3062 15 7 -0.9674 1.1242 6.9458 16 14 0.2513 2.7401 8.8377 17 1 1.6380 3.2382 9.0227 18 1 -0.6723 3.8931 8.6865 19 1 -0.1488 1.9373 10.0212 20 6 1.5838 0.0125 2.5353 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0237 -0.6238 -1.2720 25 1 1.7215 -1.6564 -1.2076 26 1 3.9516 0.1932 0.7417 27 1 4.0274 -1.5771 0.9928 28 1 4.3997 0.5361 2.9607 29 1 4.5127 -1.2301 3.2035 30 1 2.9144 1.5233 4.3159 31 1 3.3551 0.1883 5.4078 32 1 0.5348 1.0358 4.6100 33 1 0.9178 -0.4004 5.5893 34 1 -1.7661 1.2718 7.4760 35 1 0.5881 -0.3161 2.8330 36 1 1.6065 1.0926 2.3906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160598838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = -39.843354 kcal Electronic energy + Delta-G solvation = -14455.638340 eV Core-core repulsion = 12165.597677 eV Total energy + Delta-G solvation = -2290.040663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40716 -37.09719 -35.31281 -33.09296 -30.69740 -30.02376 -28.68249 -26.32330 -23.90857 -22.35088 -21.46238 -20.97133 -18.59693 -17.23206 -16.64891 -16.61861 -16.35291 -15.60917 -14.92770 -14.75558 -14.45071 -14.15264 -13.74849 -13.47649 -13.21014 -13.00188 -12.88007 -12.71028 -12.39188 -12.13519 -12.08053 -11.86434 -11.63389 -11.52430 -11.33165 -11.23331 -10.59188 -9.61481 -9.30772 -8.23020 -6.34938 1.38702 1.39290 1.52727 2.38512 3.10347 3.12572 3.49642 3.68240 3.86534 3.92683 4.24917 4.33247 4.36415 4.46254 4.50557 4.60044 4.67743 4.73845 4.83944 4.97331 5.00017 5.03568 5.09849 5.16722 5.31777 5.35529 5.41357 5.58091 5.75619 6.01231 6.14130 6.24524 6.29583 6.65414 6.81754 7.34561 8.89525 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047046 B = 0.006333 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.024492 B = 4420.418577 C = 4853.008730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 H 0.073 0.927 4 N -0.840 5.840 5 C -0.114 4.114 6 H 0.079 0.921 7 C -0.116 4.116 8 C 0.030 3.970 9 N -0.536 5.536 10 C 0.070 3.930 11 C 0.036 3.964 12 C -0.546 4.546 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.051 3.949 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.348 0.652 25 H 0.346 0.654 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.021 0.979 31 H 0.061 0.939 32 H -0.007 1.007 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -3.108 -13.624 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 H 0.091 0.909 4 N -0.369 5.369 5 C -0.135 4.135 6 H 0.098 0.902 7 C -0.153 4.153 8 C -0.098 4.098 9 N -0.260 5.260 10 C -0.058 4.058 11 C -0.001 4.001 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.078 4.078 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.162 0.838 25 H 0.159 0.841 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.058 -3.101 -13.779 15.789 hybrid contribution 0.265 0.677 1.566 1.727 sum 7.323 -2.424 -12.213 14.445 Atomic orbital electron populations 1.21796 0.94735 1.02191 1.01590 1.21295 0.95409 0.97432 0.86617 0.90868 1.58983 1.18059 1.20699 1.39201 1.22934 0.95963 1.00114 0.94466 0.90238 1.22432 0.94887 1.03243 0.94780 1.22950 0.91569 1.00839 0.94437 1.64777 1.05447 1.48043 1.07750 1.22146 0.98889 0.92219 0.92505 1.18914 0.91868 0.95018 0.94317 1.21647 0.95616 1.30804 1.10394 0.92213 1.25985 0.94894 0.97322 1.01430 1.70116 1.00579 1.45654 1.40837 0.85352 0.78634 0.78278 0.78491 1.18556 1.20206 1.20221 1.23079 0.96057 0.97145 0.91510 0.93406 0.91629 0.92344 0.83848 0.84121 0.90218 0.89227 0.94156 0.90092 0.96116 0.92004 0.98892 0.99066 0.92679 0.92569 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.30 71.98 0.67 -2.70 16 2 C 0.10 2.27 2.82 44.91 0.13 2.39 16 3 H 0.07 1.69 8.12 -2.38 -0.02 1.67 16 4 N -0.84 -14.39 9.19 -168.69 -1.55 -15.94 16 5 C -0.11 -2.81 2.76 -9.59 -0.03 -2.83 16 6 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 7 C -0.12 -2.47 5.80 31.47 0.18 -2.28 16 8 C 0.03 0.85 6.70 86.44 0.58 1.43 16 9 N -0.54 -20.26 5.35 -883.01 -4.73 -24.99 16 10 C 0.07 3.13 4.78 86.30 0.41 3.55 16 11 C 0.04 2.00 4.65 29.85 0.14 2.14 16 12 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 16 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.05 1.77 3.79 86.65 0.33 2.10 16 21 H 0.05 1.27 7.28 -2.39 -0.02 1.25 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.35 4.90 8.37 -89.69 -0.75 4.15 16 25 H 0.35 5.23 8.99 -89.69 -0.81 4.42 16 26 H 0.08 1.48 7.78 -2.39 -0.02 1.46 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.14 7.66 -2.39 -0.02 1.13 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.02 0.91 7.97 -2.39 -0.02 0.89 16 31 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 32 H -0.01 -0.43 7.18 -2.39 -0.02 -0.45 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.06 2.24 7.66 -2.39 -0.02 2.22 16 36 H 0.03 1.17 7.93 -2.39 -0.02 1.15 16 Total: -1.00 -65.74 285.83 -1.37 -67.11 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.51 Total: 11.86 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.11 Total: -27.42 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -5.99 Total: -98.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.74 -1.37 -67.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160598838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.270 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds