Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52993 * 109.47001 * 119.99844 * 2 1 3 5 5 N 1.46902 * 109.46969 * 174.99900 * 4 2 1 6 6 C 1.46904 * 111.00097 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00117 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00345 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47422 * 89.99469 * 11 9 7 13 13 H 1.48498 * 109.47388 * 210.00110 * 11 9 7 14 14 H 1.48507 * 109.46830 * 329.99950 * 11 9 7 15 15 N 1.46904 * 109.46993 * 239.99806 * 2 1 3 16 16 C 1.47840 * 110.99994 * 301.16451 * 15 2 1 17 17 C 1.54911 * 104.79484 * 146.36332 * 16 15 2 18 18 C 1.55139 * 101.65285 * 322.93039 * 17 16 15 19 19 C 1.47446 * 110.99737 * 62.01209 * 15 2 1 20 20 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 21 21 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 22 22 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 23 23 H 1.09000 * 109.47629 * 294.99850 * 4 2 1 24 24 H 1.09000 * 109.47201 * 55.00130 * 4 2 1 25 25 H 1.00900 * 110.99754 * 56.04713 * 5 4 2 26 26 H 1.08996 * 109.47469 * 300.00528 * 6 5 4 27 27 H 1.09009 * 109.46703 * 60.00494 * 6 5 4 28 28 H 0.97001 * 120.00247 * 180.02562 * 10 9 7 29 29 H 1.08997 * 110.37653 * 27.53734 * 16 15 2 30 30 H 1.08995 * 110.37317 * 265.18936 * 16 15 2 31 31 H 1.08998 * 110.99246 * 204.83539 * 17 16 15 32 32 H 1.09000 * 110.99057 * 81.02089 * 17 16 15 33 33 H 1.09004 * 110.70592 * 154.03354 * 18 17 16 34 34 H 1.09002 * 110.70773 * 277.26937 * 18 17 16 35 35 H 1.08995 * 109.89112 * 117.33654 * 19 15 2 36 36 H 1.08996 * 109.89086 * 356.14091 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0304 -1.5148 2.3767 7 6 5.5316 -1.6044 2.2807 8 1 6.0436 -1.1911 1.4242 9 6 6.2516 -2.2140 3.2861 10 7 5.6282 -2.7177 4.3288 11 14 8.1125 -2.3245 3.1675 12 1 8.7209 -1.1255 3.7981 13 1 8.5818 -3.5455 3.8704 14 1 8.5144 -2.3902 1.7393 15 7 2.0196 -0.6926 -1.1994 16 6 1.5228 -2.0841 -1.2477 17 6 1.3266 -2.3821 -2.7551 18 6 0.8060 -1.0179 -3.2791 19 6 1.5867 0.0034 -2.4251 20 1 -0.3633 -1.0202 0.1238 21 1 -0.3633 0.6173 0.8216 22 1 -0.3634 0.4029 -0.9454 23 1 1.7516 -0.1583 2.1370 24 1 1.6053 -1.7197 1.2951 25 1 3.9279 0.0826 1.0823 26 1 3.7558 -0.9570 3.2720 27 1 3.6096 -2.5189 2.4308 28 1 6.1347 -3.1463 5.0364 29 1 0.5738 -2.1669 -0.7179 30 1 2.2583 -2.7647 -0.8189 31 1 0.5849 -3.1667 -2.9048 32 1 2.2728 -2.6464 -3.2273 33 1 1.0413 -0.8959 -4.3364 34 1 -0.2664 -0.9232 -3.1084 35 1 2.4569 0.3595 -2.9764 36 1 0.9400 0.8419 -2.1667 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161166632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = 1.081925 kcal Electronic energy + Delta-G solvation = -14533.558043 eV Core-core repulsion = 12245.292033 eV Total energy + Delta-G solvation = -2288.266010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29369 -35.41873 -33.22719 -31.74815 -28.85364 -28.62936 -27.04661 -24.22366 -22.08126 -21.24858 -20.85676 -19.15758 -16.53133 -15.96795 -15.61438 -14.62932 -14.49628 -14.04562 -13.60497 -13.34225 -13.07239 -12.37987 -12.16454 -11.86942 -11.73708 -11.54995 -11.31672 -11.10554 -10.92607 -10.87245 -10.63619 -10.52810 -10.45309 -10.27195 -9.75098 -9.07187 -8.40038 -7.80793 -7.04402 -5.95478 -3.96309 3.37063 3.42691 3.48422 4.26640 4.50237 4.76236 4.86282 5.01156 5.10809 5.29974 5.40300 5.40787 5.51974 5.62157 5.72147 5.75213 5.84356 5.91840 5.98018 6.02401 6.11416 6.18864 6.28701 6.35798 6.44541 6.56730 7.33860 7.39006 7.49660 7.53762 7.90055 8.24219 8.56951 8.77568 9.14516 9.68328 11.15847 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044219 B = 0.006410 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.056511 B = 4367.320728 C = 4645.102343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.078 3.922 3 H 0.076 0.924 4 C 0.069 3.931 5 N -0.671 5.671 6 C 0.193 3.807 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.053 3.947 10 N -0.901 5.901 11 Si 0.898 3.102 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.273 1.273 15 N -0.496 5.496 16 C 0.043 3.957 17 C -0.130 4.130 18 C -0.141 4.141 19 C 0.037 3.963 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.018 0.982 24 H 0.061 0.939 25 H 0.327 0.673 26 H -0.019 1.019 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 4.166 -11.738 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.031 4.031 3 H 0.094 0.906 4 C -0.062 4.062 5 N -0.300 5.300 6 C 0.066 3.934 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 N -0.219 5.219 16 C -0.084 4.084 17 C -0.168 4.168 18 C -0.180 4.180 19 C -0.091 4.091 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.144 0.856 26 H -0.001 1.001 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.397 3.491 -11.913 16.192 hybrid contribution -0.085 0.586 0.797 0.993 sum -10.481 4.077 -11.116 15.813 Atomic orbital electron populations 1.22498 0.98233 1.02141 1.01683 1.21916 0.91470 0.98192 0.91553 0.90615 1.21901 0.92084 0.98857 0.93337 1.60518 1.01378 1.24459 1.43685 1.19551 0.94993 0.93707 0.85107 1.21218 0.91558 1.36734 1.05110 0.91906 1.24995 0.98748 0.95656 0.95335 1.69971 1.35557 1.39143 1.09434 0.86496 0.85407 0.77314 0.78175 1.20816 1.21345 1.19754 1.63704 1.56695 1.01312 1.00205 1.23065 0.99041 0.91032 0.95261 1.22716 1.01208 0.96492 0.96418 1.22776 0.99403 0.95934 0.99859 1.22873 0.98127 0.96316 0.91797 0.92232 0.92322 0.92640 0.96440 0.92089 0.85633 1.00104 0.95735 0.93059 0.93762 0.89447 0.91518 0.90739 0.91343 0.92101 0.90923 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.55 37.16 0.32 -1.96 16 2 C 0.08 1.17 2.46 -67.72 -0.17 1.00 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.07 1.26 4.87 -3.83 -0.02 1.25 16 5 N -0.67 -14.95 6.22 -115.05 -0.72 -15.67 16 6 C 0.19 5.24 5.44 -4.97 -0.03 5.21 16 7 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 11 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 N -0.50 -7.56 4.92 -223.30 -1.10 -8.66 16 16 C 0.04 0.63 5.28 -2.30 -0.01 0.62 16 17 C -0.13 -1.55 7.08 -24.59 -0.17 -1.72 16 18 C -0.14 -1.51 6.94 -24.91 -0.17 -1.68 16 19 C 0.04 0.46 6.25 -2.83 -0.02 0.44 16 20 H 0.06 0.74 6.24 -51.93 -0.32 0.41 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.62 6.29 -51.93 -0.33 0.29 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 1.15 7.33 -51.93 -0.38 0.77 16 25 H 0.33 7.13 8.72 -39.29 -0.34 6.79 16 26 H -0.02 -0.54 8.14 -51.93 -0.42 -0.96 16 27 H 0.02 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.04 0.61 5.46 -51.93 -0.28 0.33 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.58 6.18 -51.93 -0.32 0.26 16 LS Contribution 282.84 15.07 4.26 4.26 Total: -1.00 -30.52 282.84 -8.70 -39.22 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.17 Total: 1.00 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.69 Total: -10.53 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -1.08 Total: -51.18 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.52 -8.70 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161166632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.298 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds