Wall clock time and date at job start Mon Mar 30 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52993 * 109.47001 * 119.99844 * 2 1 3 5 5 N 1.46902 * 109.46969 * 174.99900 * 4 2 1 6 6 C 1.46904 * 111.00097 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00117 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99892 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00345 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47422 * 89.99469 * 11 9 7 13 13 H 1.48498 * 109.47388 * 210.00110 * 11 9 7 14 14 H 1.48507 * 109.46830 * 329.99950 * 11 9 7 15 15 N 1.46904 * 109.46993 * 239.99806 * 2 1 3 16 16 C 1.47840 * 110.99994 * 301.16451 * 15 2 1 17 17 C 1.54911 * 104.79484 * 146.36332 * 16 15 2 18 18 C 1.55139 * 101.65285 * 322.93039 * 17 16 15 19 19 C 1.47446 * 110.99737 * 62.01209 * 15 2 1 20 20 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 21 21 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 22 22 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 23 23 H 1.09000 * 109.47629 * 294.99850 * 4 2 1 24 24 H 1.09000 * 109.47201 * 55.00130 * 4 2 1 25 25 H 1.00900 * 110.99754 * 56.04713 * 5 4 2 26 26 H 1.08996 * 109.47469 * 300.00528 * 6 5 4 27 27 H 1.09009 * 109.46703 * 60.00494 * 6 5 4 28 28 H 0.97001 * 120.00247 * 180.02562 * 10 9 7 29 29 H 1.08997 * 110.37653 * 27.53734 * 16 15 2 30 30 H 1.08995 * 110.37317 * 265.18936 * 16 15 2 31 31 H 1.08998 * 110.99246 * 204.83539 * 17 16 15 32 32 H 1.09000 * 110.99057 * 81.02089 * 17 16 15 33 33 H 1.09004 * 110.70592 * 154.03354 * 18 17 16 34 34 H 1.09002 * 110.70773 * 277.26937 * 18 17 16 35 35 H 1.08995 * 109.89112 * 117.33654 * 19 15 2 36 36 H 1.08996 * 109.89086 * 356.14091 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0304 -1.5148 2.3767 7 6 5.5316 -1.6044 2.2807 8 1 6.0436 -1.1911 1.4242 9 6 6.2516 -2.2140 3.2861 10 7 5.6282 -2.7177 4.3288 11 14 8.1125 -2.3245 3.1675 12 1 8.7209 -1.1255 3.7981 13 1 8.5818 -3.5455 3.8704 14 1 8.5144 -2.3902 1.7393 15 7 2.0196 -0.6926 -1.1994 16 6 1.5228 -2.0841 -1.2477 17 6 1.3266 -2.3821 -2.7551 18 6 0.8060 -1.0179 -3.2791 19 6 1.5867 0.0034 -2.4251 20 1 -0.3633 -1.0202 0.1238 21 1 -0.3633 0.6173 0.8216 22 1 -0.3634 0.4029 -0.9454 23 1 1.7516 -0.1583 2.1370 24 1 1.6053 -1.7197 1.2951 25 1 3.9279 0.0826 1.0823 26 1 3.7558 -0.9570 3.2720 27 1 3.6096 -2.5189 2.4308 28 1 6.1347 -3.1463 5.0364 29 1 0.5738 -2.1669 -0.7179 30 1 2.2583 -2.7647 -0.8189 31 1 0.5849 -3.1667 -2.9048 32 1 2.2728 -2.6464 -3.2273 33 1 1.0413 -0.8959 -4.3364 34 1 -0.2664 -0.9232 -3.1084 35 1 2.4569 0.3595 -2.9764 36 1 0.9400 0.8419 -2.1667 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161166632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:31 Heat of formation + Delta-G solvation = -20.988615 kcal Electronic energy + Delta-G solvation = -14534.515094 eV Core-core repulsion = 12245.292033 eV Total energy + Delta-G solvation = -2289.223060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41715 -37.08255 -34.99712 -33.51797 -30.01480 -29.66362 -28.90618 -25.93170 -23.39132 -23.19156 -21.83149 -20.38054 -18.54049 -17.38771 -16.69496 -16.62930 -15.83082 -15.61693 -14.97079 -14.71899 -14.51709 -14.00112 -13.35980 -13.30857 -13.28560 -13.00464 -12.69454 -12.65787 -12.54349 -12.11723 -12.03539 -11.90402 -11.86580 -11.57042 -11.37532 -11.18103 -10.65077 -8.97091 -8.90381 -8.21225 -6.32090 1.40976 1.43251 1.55395 2.41307 3.11588 3.14045 3.63007 3.81496 3.90112 4.03881 4.18004 4.24550 4.43698 4.48494 4.64564 4.67766 4.74090 4.77629 4.87771 4.99427 5.03548 5.08709 5.12273 5.14141 5.24133 5.28990 5.37831 5.44504 5.63812 6.04960 6.28553 6.36600 6.53965 6.80004 6.95435 7.39017 8.90552 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044219 B = 0.006410 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.056511 B = 4367.320728 C = 4645.102343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.080 0.920 4 C 0.070 3.930 5 N -0.668 5.668 6 C 0.210 3.790 7 C -0.531 4.531 8 H 0.062 0.938 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.975 3.025 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.266 1.266 15 N -0.523 5.523 16 C 0.042 3.958 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.035 3.965 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.050 0.950 25 H 0.331 0.669 26 H -0.045 1.045 27 H -0.006 1.006 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 4.956 -13.249 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.098 0.902 4 C -0.060 4.060 5 N -0.298 5.298 6 C 0.082 3.918 7 C -0.570 4.570 8 H 0.081 0.919 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.799 3.201 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.190 1.190 15 N -0.247 5.247 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.169 4.169 19 C -0.092 4.092 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.093 0.907 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.148 0.852 26 H -0.027 1.027 27 H 0.012 0.988 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.642 4.298 -13.443 17.676 hybrid contribution -0.052 0.338 1.279 1.324 sum -10.694 4.636 -12.164 16.847 Atomic orbital electron populations 1.22393 0.95646 1.02378 1.03141 1.21785 0.93386 0.97486 0.89741 0.90225 1.21979 0.89465 0.98930 0.95666 1.60401 1.03887 1.24489 1.41010 1.19190 0.94521 0.92226 0.85897 1.21541 0.92629 1.37346 1.05444 0.91935 1.25976 1.04370 0.94820 0.94687 1.70100 1.37823 1.39575 1.10200 0.85308 0.78524 0.77784 0.78519 1.19544 1.20620 1.19011 1.63577 1.57991 1.01819 1.01340 1.22970 0.97996 0.90293 0.97254 1.22688 1.01489 0.98075 0.94151 1.22741 0.99854 0.93946 1.00371 1.22911 0.98573 0.96990 0.90716 0.92502 0.91391 0.90701 0.96408 0.93178 0.85171 1.02696 0.98790 0.92657 0.93102 0.93355 0.89736 0.91634 0.89632 0.90631 0.91359 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.55 71.98 0.62 -3.30 16 2 C 0.09 2.46 2.46 44.91 0.11 2.57 16 3 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.07 2.61 4.87 86.30 0.42 3.03 16 5 N -0.67 -30.63 6.22 -517.92 -3.22 -33.84 16 6 C 0.21 11.84 5.44 85.56 0.47 12.31 16 7 C -0.53 -31.68 9.32 25.60 0.24 -31.44 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 11 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 N -0.52 -15.51 4.92 -860.38 -4.23 -19.74 16 16 C 0.04 1.23 5.28 86.78 0.46 1.69 16 17 C -0.13 -2.79 7.08 31.98 0.23 -2.56 16 18 C -0.13 -2.39 6.94 31.78 0.22 -2.17 16 19 C 0.04 0.80 6.25 86.65 0.54 1.34 16 20 H 0.06 1.30 6.24 -2.39 -0.01 1.29 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.07 1.40 6.29 -2.39 -0.02 1.38 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 1.96 7.33 -2.39 -0.02 1.95 16 25 H 0.33 14.68 8.72 -89.69 -0.78 13.89 16 26 H -0.04 -2.69 8.14 -2.39 -0.02 -2.71 16 27 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.05 1.38 5.46 -2.39 -0.01 1.37 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.27 6.18 -2.39 -0.01 1.26 16 Total: -1.00 -66.36 282.84 -1.12 -67.48 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.26 Total: 14.53 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 3.76 Total: -18.12 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -7.16 Total: -111.61 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -66.36 -1.12 -67.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161166632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.495 kcal (2) G-P(sol) polarization free energy of solvation -66.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds