Wall clock time and date at job start Mon Mar 30 2020 03:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46902 * 110.99478 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46932 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99967 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00028 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00215 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99957 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47092 * 90.00076 * 11 9 7 13 13 H 1.48506 * 109.46924 * 209.99950 * 11 9 7 14 14 H 1.48497 * 109.47223 * 329.99791 * 11 9 7 15 15 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 16 16 C 1.48532 * 111.00167 * 177.60186 * 15 2 1 17 17 C 1.54928 * 103.22784 * 159.72352 * 16 15 2 18 18 C 1.54594 * 102.92393 * 322.58593 * 17 16 15 19 19 C 1.47900 * 111.00267 * 295.00250 * 15 2 1 20 20 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 21 21 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 24 24 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 25 25 H 1.00899 * 110.99764 * 303.94896 * 5 4 2 26 26 H 1.09003 * 109.46837 * 299.99264 * 6 5 4 27 27 H 1.08993 * 109.47729 * 59.99816 * 6 5 4 28 28 H 0.96999 * 120.00150 * 180.02562 * 10 9 7 29 29 H 1.08999 * 110.66679 * 278.16073 * 16 15 2 30 30 H 1.09004 * 110.66209 * 41.28817 * 16 15 2 31 31 H 1.09001 * 110.72421 * 204.23231 * 17 16 15 32 32 H 1.08998 * 110.88112 * 81.01955 * 17 16 15 33 33 H 1.08999 * 110.31256 * 263.04796 * 18 17 16 34 34 H 1.09000 * 110.30998 * 140.87304 * 18 17 16 35 35 H 1.09002 * 109.91231 * 333.50938 * 19 15 2 36 36 H 1.08997 * 109.92026 * 94.79910 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0303 -1.5148 -2.3768 7 6 5.5315 -1.6044 -2.2808 8 1 6.0435 -1.1911 -1.4243 9 6 6.2515 -2.2140 -3.2863 10 7 5.6281 -2.7178 -4.3290 11 14 8.1124 -2.3245 -3.1676 12 1 8.4904 -3.5820 -2.4740 13 1 8.6968 -2.3173 -4.5328 14 1 8.6295 -1.1621 -2.4017 15 7 2.0197 -0.6925 1.1994 16 6 3.5033 -0.7628 1.2051 17 6 3.8407 -1.0123 2.6964 18 6 2.7915 -0.1517 3.4370 19 6 1.6462 0.0441 2.4264 20 1 -0.3634 0.5137 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6053 -1.7197 -1.2952 24 1 1.7516 -0.1583 -2.1370 25 1 3.9279 0.0826 -1.0824 26 1 3.6095 -2.5189 -2.4309 27 1 3.7558 -0.9570 -3.2721 28 1 6.1345 -3.1470 -5.0362 29 1 3.8516 -1.5910 0.5880 30 1 3.9343 0.1791 0.8655 31 1 4.8504 -0.6715 2.9258 32 1 3.7239 -2.0659 2.9502 33 1 3.2198 0.8115 3.7144 34 1 2.4297 -0.6748 4.3221 35 1 1.5266 1.1039 2.2013 36 1 0.7188 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161166744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:34 Heat of formation + Delta-G solvation = -9.962254 kcal Electronic energy + Delta-G solvation = -14682.337781 eV Core-core repulsion = 12393.592859 eV Total energy + Delta-G solvation = -2288.744921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22191 -37.06369 -35.09701 -33.72439 -30.00037 -29.82862 -28.60825 -25.90768 -23.66183 -22.51633 -21.52953 -20.96878 -18.51088 -17.47115 -16.74267 -16.57387 -15.85351 -15.46736 -14.94277 -14.55344 -14.33820 -13.85816 -13.74842 -13.37456 -13.13284 -13.00538 -12.79945 -12.58931 -12.24246 -12.16428 -12.07914 -11.88144 -11.70059 -11.57260 -11.29763 -11.16693 -10.64147 -9.20249 -8.80988 -8.21860 -6.32810 1.41249 1.43247 1.54034 2.40169 3.11756 3.17538 3.56767 3.84782 3.94229 4.11534 4.22684 4.32327 4.51226 4.56589 4.63747 4.77697 4.84146 4.88642 4.96989 5.03352 5.07937 5.10320 5.14864 5.25486 5.28174 5.38641 5.45273 5.61548 5.75779 6.02090 6.22583 6.35516 6.41308 6.69883 6.88199 7.38070 8.89993 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.007583 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.968398 B = 3691.408904 C = 4342.607117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.036 0.964 4 C 0.063 3.937 5 N -0.669 5.669 6 C 0.206 3.794 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.972 3.028 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.262 1.262 15 N -0.519 5.519 16 C 0.053 3.947 17 C -0.132 4.132 18 C -0.124 4.124 19 C 0.034 3.966 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.023 0.977 25 H 0.330 0.670 26 H -0.003 1.003 27 H -0.043 1.043 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 6.858 12.909 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.053 0.947 4 C -0.067 4.067 5 N -0.299 5.299 6 C 0.078 3.922 7 C -0.568 4.568 8 H 0.085 0.915 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.797 3.203 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.186 1.186 15 N -0.245 5.245 16 C -0.075 4.075 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.094 4.094 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.147 0.853 26 H 0.015 0.985 27 H -0.025 1.025 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.295 5.687 13.101 16.038 hybrid contribution 1.038 1.160 -1.301 2.029 sum -6.257 6.848 11.800 15.009 Atomic orbital electron populations 1.21723 0.92402 1.02550 1.02432 1.21796 0.96652 0.94380 0.89991 0.94652 1.22022 0.89170 0.99797 0.95709 1.61363 1.04255 1.23839 1.40422 1.19231 0.94613 0.92459 0.85894 1.21521 0.92401 1.37365 1.05529 0.91531 1.25962 1.04215 0.94912 0.94727 1.70099 1.37836 1.39465 1.10240 0.85338 0.78664 0.78947 0.77373 1.19893 1.20843 1.18614 1.64747 1.11082 1.47435 1.01190 1.23409 0.86964 1.01582 0.95563 1.22626 0.98941 1.00215 0.95293 1.22378 0.95377 1.00244 0.98209 1.22936 0.99297 0.96370 0.90798 0.91198 0.91533 0.92308 0.92363 0.95859 0.85292 0.98482 1.02546 0.92695 0.88873 0.95369 0.91049 0.91826 0.90954 0.90185 0.93907 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.18 71.98 0.66 -2.46 16 2 C 0.08 2.39 2.22 44.92 0.10 2.49 16 3 H 0.04 1.03 7.96 -2.39 -0.02 1.02 16 4 C 0.06 2.32 5.34 86.30 0.46 2.78 16 5 N -0.67 -28.85 2.61 -517.92 -1.35 -30.20 16 6 C 0.21 11.19 5.44 85.56 0.47 11.65 16 7 C -0.53 -30.30 9.32 25.60 0.24 -30.06 16 8 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 10 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 11 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 15 N -0.52 -15.69 5.11 -857.88 -4.38 -20.08 16 16 C 0.05 1.74 4.66 86.65 0.40 2.14 16 17 C -0.13 -3.55 7.06 31.80 0.22 -3.32 16 18 C -0.12 -2.67 6.93 31.47 0.22 -2.45 16 19 C 0.03 0.79 5.55 86.45 0.48 1.27 16 20 H 0.07 1.39 7.35 -2.39 -0.02 1.37 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.33 13.65 7.58 -89.69 -0.68 12.97 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.09 3.83 6.30 -2.39 -0.02 3.82 16 30 H 0.03 0.95 6.90 -2.38 -0.02 0.93 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 0.95 7.65 -2.39 -0.02 0.93 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -62.70 282.44 0.64 -62.06 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.35 Total: 16.19 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 3.71 Total: -17.49 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.45 Total: -107.32 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -62.70 0.64 -62.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161166744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.095 kcal (2) G-P(sol) polarization free energy of solvation -62.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds