Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.52564 * 2 1 4 4 C 1.53116 * 109.52547 * 239.87242 * 2 1 3 5 5 C 1.53034 * 109.27824 * 297.74729 * 4 2 1 6 6 N 1.46841 * 109.52789 * 300.82350 * 5 4 2 7 7 C 1.46899 * 111.00155 * 185.83991 * 6 5 4 8 8 C 1.50696 * 109.47380 * 66.04291 * 7 6 5 9 9 H 1.07998 * 120.00156 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00133 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99677 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99852 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47341 * 60.00289 * 12 10 8 14 14 H 1.48499 * 109.46761 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47178 * 299.99945 * 12 10 8 16 16 C 1.46844 * 111.20239 * 61.73685 * 6 5 4 17 17 C 1.53122 * 109.52505 * 120.12443 * 2 1 3 18 18 H 1.08994 * 109.50847 * 182.19287 * 17 2 1 19 19 C 1.52999 * 109.50306 * 302.31377 * 17 2 1 20 20 N 1.46904 * 109.47279 * 184.99708 * 19 17 2 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00151 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00132 * 1 2 3 24 24 H 1.09001 * 109.50163 * 57.68998 * 4 2 1 25 25 H 1.09003 * 109.50715 * 177.80730 * 4 2 1 26 26 H 1.09006 * 109.46079 * 60.83857 * 5 4 2 27 27 H 1.08997 * 109.46596 * 180.80013 * 5 4 2 28 28 H 1.08999 * 109.46847 * 186.04397 * 7 6 5 29 29 H 1.08996 * 109.47157 * 306.04021 * 7 6 5 30 30 H 0.96993 * 119.99738 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.45876 * 58.27236 * 16 6 5 32 32 H 1.08991 * 109.46643 * 178.25689 * 16 6 5 33 33 H 1.09001 * 109.47025 * 304.99383 * 19 17 2 34 34 H 1.09005 * 109.47554 * 64.99393 * 19 17 2 35 35 H 1.00896 * 110.99736 * 179.97438 * 20 19 17 36 36 H 1.00903 * 110.99580 * 303.95385 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 -1.2482 5 6 1.5767 -2.1819 -1.2128 6 7 2.0925 -2.8324 -0.0015 7 6 1.7824 -4.2683 -0.0023 8 6 2.5343 -4.9439 -1.1199 9 1 3.1784 -4.3647 -1.7649 10 6 2.4007 -6.3018 -1.3185 11 7 1.6166 -7.0072 -0.5328 12 14 3.3321 -7.1392 -2.7043 13 1 4.7914 -6.9474 -2.5066 14 1 3.0187 -8.5907 -2.7050 15 1 2.9263 -6.5450 -4.0034 16 6 1.5767 -2.1833 1.2105 17 6 2.0417 -0.7243 1.2482 18 1 3.1310 -0.6903 1.2679 19 6 1.4858 -0.0410 2.4992 20 7 2.0708 -0.6600 3.6962 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6457 -0.2375 -2.1394 25 1 3.1310 -0.6903 -1.2678 26 1 0.4872 -2.2155 -1.2072 27 1 1.9514 -2.7042 -2.0931 28 1 2.0795 -4.7046 0.9513 29 1 0.7114 -4.4086 -0.1481 30 1 1.5223 -7.9624 -0.6727 31 1 0.4872 -2.2168 1.2047 32 1 1.9515 -2.7063 2.0902 33 1 1.7396 1.0188 2.4775 34 1 0.4020 -0.1546 2.5242 35 1 1.7194 -0.2255 4.5363 36 1 1.9044 -1.6552 3.7066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167661934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -13.899361 kcal Electronic energy + Delta-G solvation = -14918.571041 eV Core-core repulsion = 12629.655394 eV Total energy + Delta-G solvation = -2288.915647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21828 -35.08122 -33.62038 -32.15923 -29.84196 -27.93408 -26.34652 -24.42633 -23.30328 -21.45703 -20.40741 -17.93728 -16.26491 -15.98275 -15.32635 -15.04942 -14.52324 -13.89653 -13.65774 -13.48249 -13.03834 -12.72930 -12.61919 -12.06108 -11.58287 -11.33462 -11.16416 -11.02015 -10.77338 -10.60127 -10.57219 -10.13863 -10.04375 -9.86843 -9.50855 -9.09846 -8.56219 -8.40191 -7.11951 -6.00084 -4.01152 3.35335 3.39040 3.42385 4.44524 4.64264 4.88216 5.06578 5.11580 5.33518 5.36181 5.41537 5.63656 5.72517 5.82208 5.86052 5.92791 6.00729 6.13243 6.21162 6.25986 6.32715 6.48902 6.54684 6.67540 6.81248 6.86801 7.22906 7.35534 7.39188 7.50823 7.84508 8.15036 8.27994 8.61409 9.06612 9.62900 11.10832 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041933 B = 0.007829 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.567561 B = 3575.657738 C = 3939.130917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.062 0.938 4 C -0.112 4.112 5 C 0.064 3.936 6 N -0.534 5.534 7 C 0.194 3.806 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.061 3.939 17 C -0.079 4.079 18 H 0.084 0.916 19 C 0.068 3.932 20 N -0.852 5.852 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.081 0.919 28 H 0.029 0.971 29 H -0.012 1.012 30 H 0.261 0.739 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.335 0.665 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 13.016 3.224 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.065 4.065 6 N -0.259 5.259 7 C 0.069 3.931 8 C -0.545 4.545 9 H 0.081 0.919 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.067 4.067 17 C -0.098 4.098 18 H 0.102 0.898 19 C -0.063 4.063 20 N -0.382 5.382 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.146 0.854 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.200 13.117 2.960 13.500 hybrid contribution -1.472 -0.965 -0.438 1.813 sum -2.672 12.152 2.522 12.696 Atomic orbital electron populations 1.21993 0.96017 1.02155 1.00781 1.21114 0.95278 0.98547 0.95438 0.91915 1.21649 1.01243 0.95949 0.96147 1.21953 0.96192 0.93080 0.95235 1.61969 1.58811 1.05333 0.99757 1.19684 0.94472 0.81029 0.97901 1.21141 1.26583 0.92594 1.14161 0.91907 1.24994 0.95607 0.97412 0.96643 1.69952 1.38277 1.07209 1.38538 0.86561 0.80372 0.78152 0.82326 1.20144 1.21386 1.20315 1.22061 0.96095 0.93664 0.94922 1.21239 1.01480 0.94674 0.92394 0.89804 1.21871 0.95777 0.98381 0.90319 1.58738 1.66251 1.08989 1.04272 0.92125 0.93158 0.93142 0.92477 0.91449 0.96213 0.90105 0.95323 0.99419 0.92925 0.96323 0.91712 0.91521 0.95646 0.85370 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.20 37.16 0.30 -1.70 16 2 C -0.08 -1.19 2.77 -90.50 -0.25 -1.44 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.77 5.60 -26.65 -0.15 -1.92 16 5 C 0.06 1.26 5.05 -3.84 -0.02 1.24 16 6 N -0.53 -11.76 4.65 -236.04 -1.10 -12.85 16 7 C 0.19 5.16 4.72 -4.98 -0.02 5.14 16 8 C -0.51 -14.43 8.43 -34.44 -0.29 -14.72 16 9 H 0.06 1.77 7.14 -52.49 -0.37 1.40 16 10 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 12 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 C 0.06 1.13 4.26 -3.76 -0.02 1.11 16 17 C -0.08 -1.20 2.34 -90.47 -0.21 -1.41 16 18 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 19 C 0.07 0.86 5.68 -3.82 -0.02 0.84 16 20 N -0.85 -10.54 9.62 -10.36 -0.10 -10.64 16 21 H 0.06 0.92 4.92 -51.93 -0.26 0.67 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.59 6.52 -51.93 -0.34 0.25 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.02 0.39 6.51 -51.93 -0.34 0.06 16 27 H 0.08 1.75 6.72 -51.93 -0.35 1.40 16 28 H 0.03 0.81 7.98 -51.93 -0.41 0.40 16 29 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.02 0.35 6.51 -51.93 -0.34 0.01 16 32 H 0.06 1.21 6.60 -51.93 -0.34 0.86 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.31 6.69 -51.93 -0.35 -0.03 16 35 H 0.33 3.31 9.08 -39.29 -0.36 2.96 16 36 H 0.34 4.40 7.29 -39.29 -0.29 4.11 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -29.89 272.15 -7.99 -37.88 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.83 Total: 2.35 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.78 Total: -11.40 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.46 Total: -49.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.89 -7.99 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167661934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.985 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds