Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.52564 * 2 1 4 4 C 1.53116 * 109.52547 * 239.87242 * 2 1 3 5 5 C 1.53034 * 109.27824 * 297.74729 * 4 2 1 6 6 N 1.46841 * 109.52789 * 300.82350 * 5 4 2 7 7 C 1.46899 * 111.00155 * 185.83991 * 6 5 4 8 8 C 1.50696 * 109.47380 * 66.04291 * 7 6 5 9 9 H 1.07998 * 120.00156 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00133 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99677 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99852 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47341 * 60.00289 * 12 10 8 14 14 H 1.48499 * 109.46761 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47178 * 299.99945 * 12 10 8 16 16 C 1.46844 * 111.20239 * 61.73685 * 6 5 4 17 17 C 1.53122 * 109.52505 * 120.12443 * 2 1 3 18 18 H 1.08994 * 109.50847 * 182.19287 * 17 2 1 19 19 C 1.52999 * 109.50306 * 302.31377 * 17 2 1 20 20 N 1.46904 * 109.47279 * 184.99708 * 19 17 2 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00151 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00132 * 1 2 3 24 24 H 1.09001 * 109.50163 * 57.68998 * 4 2 1 25 25 H 1.09003 * 109.50715 * 177.80730 * 4 2 1 26 26 H 1.09006 * 109.46079 * 60.83857 * 5 4 2 27 27 H 1.08997 * 109.46596 * 180.80013 * 5 4 2 28 28 H 1.08999 * 109.46847 * 186.04397 * 7 6 5 29 29 H 1.08996 * 109.47157 * 306.04021 * 7 6 5 30 30 H 0.96993 * 119.99738 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.45876 * 58.27236 * 16 6 5 32 32 H 1.08991 * 109.46643 * 178.25689 * 16 6 5 33 33 H 1.09001 * 109.47025 * 304.99383 * 19 17 2 34 34 H 1.09005 * 109.47554 * 64.99393 * 19 17 2 35 35 H 1.00896 * 110.99736 * 179.97438 * 20 19 17 36 36 H 1.00903 * 110.99580 * 303.95385 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 -1.2482 5 6 1.5767 -2.1819 -1.2128 6 7 2.0925 -2.8324 -0.0015 7 6 1.7824 -4.2683 -0.0023 8 6 2.5343 -4.9439 -1.1199 9 1 3.1784 -4.3647 -1.7649 10 6 2.4007 -6.3018 -1.3185 11 7 1.6166 -7.0072 -0.5328 12 14 3.3321 -7.1392 -2.7043 13 1 4.7914 -6.9474 -2.5066 14 1 3.0187 -8.5907 -2.7050 15 1 2.9263 -6.5450 -4.0034 16 6 1.5767 -2.1833 1.2105 17 6 2.0417 -0.7243 1.2482 18 1 3.1310 -0.6903 1.2679 19 6 1.4858 -0.0410 2.4992 20 7 2.0708 -0.6600 3.6962 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6457 -0.2375 -2.1394 25 1 3.1310 -0.6903 -1.2678 26 1 0.4872 -2.2155 -1.2072 27 1 1.9514 -2.7042 -2.0931 28 1 2.0795 -4.7046 0.9513 29 1 0.7114 -4.4086 -0.1481 30 1 1.5223 -7.9624 -0.6727 31 1 0.4872 -2.2168 1.2047 32 1 1.9515 -2.7063 2.0902 33 1 1.7396 1.0188 2.4775 34 1 0.4020 -0.1546 2.5242 35 1 1.7194 -0.2255 4.5363 36 1 1.9044 -1.6552 3.7066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167661934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -36.100544 kcal Electronic energy + Delta-G solvation = -14919.533757 eV Core-core repulsion = 12629.655394 eV Total energy + Delta-G solvation = -2289.878363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61321 -36.60166 -35.06953 -34.09191 -31.16312 -29.65713 -27.87236 -25.73958 -25.09332 -22.99992 -21.95092 -19.25628 -18.43649 -17.31068 -16.59360 -16.47514 -16.17697 -15.46050 -15.22742 -14.98218 -14.33793 -14.14541 -13.98793 -13.70019 -13.26038 -12.83749 -12.76102 -12.62310 -12.50250 -12.19492 -11.97233 -11.90063 -11.57621 -11.37954 -11.05724 -10.85747 -10.61770 -9.53697 -8.93742 -8.21846 -6.32466 1.39500 1.43285 1.51227 2.39243 3.09876 3.29392 3.63036 3.88156 3.89916 4.11437 4.23931 4.43517 4.46670 4.53089 4.63999 4.68822 4.74135 4.81607 4.94176 4.97730 5.11409 5.12661 5.14367 5.27831 5.32920 5.35331 5.44986 5.58759 5.65542 6.05305 6.24460 6.38076 6.61910 6.68715 6.84090 7.37371 8.89140 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041933 B = 0.007829 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.567561 B = 3575.657738 C = 3939.130917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 H 0.093 0.907 4 C -0.105 4.105 5 C 0.064 3.936 6 N -0.543 5.543 7 C 0.210 3.790 8 C -0.525 4.525 9 H 0.062 0.938 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.971 3.029 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.062 3.938 17 C -0.070 4.070 18 H 0.068 0.932 19 C 0.074 3.926 20 N -0.861 5.861 21 H 0.032 0.968 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.000 1.000 29 H -0.043 1.043 30 H 0.265 0.735 31 H 0.016 0.984 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.350 0.650 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 14.928 2.660 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.112 0.888 4 C -0.142 4.142 5 C -0.064 4.064 6 N -0.267 5.267 7 C 0.083 3.917 8 C -0.563 4.563 9 H 0.080 0.920 10 C -0.197 4.197 11 N -0.576 5.576 12 Si 0.795 3.205 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.066 4.066 17 C -0.089 4.089 18 H 0.086 0.914 19 C -0.057 4.057 20 N -0.393 5.393 21 H 0.051 0.949 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.018 0.982 29 H -0.026 1.026 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.163 0.837 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.847 15.065 2.409 15.280 hybrid contribution -1.609 -1.551 -0.215 2.245 sum -2.455 13.514 2.194 13.909 Atomic orbital electron populations 1.21949 0.95132 1.00845 1.02584 1.21143 0.95936 0.99509 0.93439 0.88840 1.21616 1.01032 0.93079 0.98520 1.21973 0.95812 0.95480 0.93153 1.61919 1.59485 1.03215 1.02122 1.19326 0.92188 0.84170 0.95973 1.21439 1.26878 0.93280 1.14733 0.91986 1.25951 0.96402 0.98080 0.99311 1.70085 1.39568 1.07628 1.40293 0.85412 0.79014 0.77035 0.79024 1.19311 1.20665 1.19150 1.22131 0.95854 0.95763 0.92849 1.21170 1.00521 0.92429 0.94817 0.91395 1.21815 0.95972 0.98943 0.88954 1.58736 1.66590 1.08833 1.05094 0.94907 0.91569 0.91217 0.89927 0.91914 0.96704 0.92642 0.98178 1.02554 0.92648 0.96566 0.92708 0.89495 0.94932 0.83652 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.20 71.98 0.59 -2.90 16 2 C -0.08 -2.06 2.77 -10.71 -0.03 -2.09 16 3 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.10 -3.13 5.60 30.64 0.17 -2.96 16 5 C 0.06 2.57 5.05 86.33 0.44 3.00 16 6 N -0.54 -24.66 4.65 -900.69 -4.18 -28.85 16 7 C 0.21 11.73 4.72 85.56 0.40 12.14 16 8 C -0.53 -30.85 8.43 25.60 0.22 -30.64 16 9 H 0.06 3.57 7.14 -2.91 -0.02 3.55 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 12 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 C 0.06 2.33 4.26 86.37 0.37 2.70 16 17 C -0.07 -2.02 2.34 -10.69 -0.03 -2.05 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.07 1.68 5.68 86.30 0.49 2.17 16 20 N -0.86 -19.89 9.62 -186.70 -1.80 -21.69 16 21 H 0.03 0.95 4.92 -2.39 -0.01 0.94 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.38 6.52 -2.38 -0.02 1.36 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.01 0.61 6.51 -2.38 -0.02 0.59 16 27 H 0.06 2.47 6.72 -2.39 -0.02 2.45 16 28 H 0.00 0.01 7.98 -2.39 -0.02 -0.01 16 29 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.02 0.62 6.51 -2.39 -0.02 0.60 16 32 H 0.05 2.12 6.60 -2.39 -0.02 2.10 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 0.71 6.69 -2.38 -0.02 0.69 16 35 H 0.35 6.20 9.08 -89.70 -0.81 5.38 16 36 H 0.34 8.50 7.29 -89.69 -0.65 7.85 16 Total: -1.00 -65.89 272.15 -0.99 -66.88 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.40 Total: 13.90 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.08 Total: -20.13 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -5.70 Total: -107.88 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.89 -0.99 -66.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167661934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.777 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds