Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.57032 * 2 1 4 4 C 1.53117 * 109.52004 * 120.15682 * 2 1 3 5 5 C 1.53038 * 109.27421 * 177.55387 * 4 2 1 6 6 N 1.46847 * 109.52866 * 300.82510 * 5 4 2 7 7 C 1.46899 * 111.00044 * 185.83761 * 6 5 4 8 8 C 1.50703 * 109.47107 * 66.04660 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99923 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00006 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47093 * 90.00088 * 12 10 8 14 14 H 1.48495 * 109.46891 * 210.00496 * 12 10 8 15 15 H 1.48504 * 109.47189 * 330.00185 * 12 10 8 16 16 C 1.46844 * 111.19785 * 61.74095 * 6 5 4 17 17 C 1.53039 * 109.52096 * 298.26028 * 16 6 5 18 18 H 1.09000 * 109.50342 * 299.23848 * 17 16 6 19 19 C 1.53003 * 109.53325 * 179.13932 * 17 16 6 20 20 N 1.46900 * 109.47228 * 65.17960 * 19 17 16 21 21 H 1.09007 * 109.46971 * 299.84415 * 1 2 3 22 22 H 1.08999 * 109.46902 * 59.83851 * 1 2 3 23 23 H 1.09000 * 109.47381 * 179.84267 * 1 2 3 24 24 H 1.09005 * 109.50250 * 57.62193 * 4 2 1 25 25 H 1.08997 * 109.54047 * 297.51939 * 4 2 1 26 26 H 1.09001 * 109.46416 * 180.80264 * 5 4 2 27 27 H 1.09007 * 109.45857 * 60.84399 * 5 4 2 28 28 H 1.09002 * 109.47043 * 186.04640 * 7 6 5 29 29 H 1.09001 * 109.47354 * 306.04701 * 7 6 5 30 30 H 0.97000 * 119.99684 * 180.02562 * 11 10 8 31 31 H 1.09004 * 109.46477 * 58.27519 * 16 6 5 32 32 H 1.08993 * 109.46460 * 178.24692 * 16 6 5 33 33 H 1.09002 * 109.46841 * 185.17609 * 19 17 16 34 34 H 1.08993 * 109.47247 * 305.17643 * 19 17 16 35 35 H 1.00896 * 111.00262 * 180.02562 * 20 19 17 36 36 H 1.00903 * 110.99739 * 303.95283 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 1.2478 5 6 3.5708 -0.7752 1.2116 6 7 4.0102 -1.4790 -0.0001 7 6 5.4670 -1.6678 -0.0001 8 6 5.8523 -2.6029 1.1172 9 1 5.0912 -3.0152 1.7630 10 6 7.1767 -2.9311 1.3157 11 7 7.5129 -3.7474 2.2904 12 14 8.4933 -2.2173 0.1991 13 1 8.9833 -0.9361 0.7678 14 1 9.6229 -3.1751 0.0908 15 1 7.9202 -1.9734 -1.1490 16 6 3.5708 -0.7752 -1.2117 17 6 2.0417 -0.7251 -1.2478 18 1 1.6446 -1.7400 -1.2674 19 6 1.5839 0.0269 -2.4992 20 7 1.9717 -0.7320 -3.6957 21 1 -0.3633 0.5114 0.8914 22 1 -0.3633 0.5163 -0.8885 23 1 -0.3634 -1.0276 -0.0028 24 1 1.6447 -1.7400 1.2674 25 1 1.7162 -0.1896 2.1397 26 1 3.9378 -1.3034 2.0916 27 1 3.9675 0.2401 1.2059 28 1 5.7782 -2.0938 -0.9540 29 1 5.9582 -0.7057 0.1456 30 1 8.4446 -3.9780 2.4302 31 1 3.9675 0.2401 -1.2060 32 1 3.9377 -1.3034 -2.0917 33 1 0.5002 0.1422 -2.4776 34 1 2.0535 1.0101 -2.5244 35 1 1.6807 -0.2555 -4.5362 36 1 2.9652 -0.9081 -3.7059 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167662047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = -13.131008 kcal Electronic energy + Delta-G solvation = -14814.278029 eV Core-core repulsion = 12525.395700 eV Total energy + Delta-G solvation = -2288.882329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06872 -35.28846 -33.75784 -32.29850 -29.90420 -28.84566 -26.32805 -24.55791 -22.33986 -21.39920 -20.16582 -19.27472 -16.78486 -16.00105 -15.01071 -14.83674 -14.32672 -14.13725 -13.94238 -13.49616 -13.30700 -12.79588 -12.36015 -12.27331 -12.01145 -11.56007 -11.42871 -11.16708 -10.75096 -10.67241 -10.66207 -10.23167 -9.89402 -9.79493 -9.59796 -9.19478 -8.67040 -8.56221 -7.32239 -6.03770 -4.00686 3.28387 3.36109 3.38197 4.42983 4.55776 4.72913 4.97568 5.07064 5.12756 5.27891 5.38472 5.57732 5.60634 5.76324 5.82732 5.86435 5.96131 6.02792 6.05168 6.19723 6.27386 6.38401 6.40241 6.58155 6.73639 6.76811 6.91250 7.02825 7.16360 7.42909 7.63560 7.96385 8.12042 8.69005 9.05224 9.58239 11.09435 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038771 B = 0.008271 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.024314 B = 3384.365228 C = 3913.306387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.060 0.940 4 C -0.111 4.111 5 C 0.063 3.937 6 N -0.525 5.525 7 C 0.162 3.838 8 C -0.508 4.508 9 H 0.081 0.919 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.875 3.125 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.268 1.268 16 C 0.059 3.941 17 C -0.078 4.078 18 H 0.087 0.913 19 C 0.066 3.934 20 N -0.851 5.851 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.016 0.984 28 H 0.028 0.972 29 H -0.019 1.019 30 H 0.263 0.737 31 H 0.015 0.985 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.335 0.665 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 9.333 -7.592 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.065 4.065 6 N -0.249 5.249 7 C 0.036 3.964 8 C -0.546 4.546 9 H 0.099 0.901 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.703 3.297 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.192 1.192 16 C -0.070 4.070 17 C -0.097 4.097 18 H 0.105 0.895 19 C -0.065 4.065 20 N -0.381 5.381 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.035 0.965 28 H 0.046 0.954 29 H -0.001 1.001 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.147 0.853 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.648 8.202 -7.211 15.967 hybrid contribution 1.876 2.015 -0.784 2.862 sum -9.772 10.216 -7.995 16.242 Atomic orbital electron populations 1.21868 0.95588 1.01844 1.00947 1.21165 0.95078 0.98950 0.95408 0.92107 1.21668 0.96262 1.00775 0.96139 1.21989 0.93594 0.95783 0.95168 1.61826 1.15573 1.47377 1.00083 1.20166 0.82814 0.95131 0.98286 1.21050 0.93470 1.26579 1.13503 0.90078 1.24902 0.98372 0.94923 0.95174 1.69895 1.17760 1.35326 1.31005 0.86861 0.81893 0.79073 0.81891 1.20446 1.21124 1.19250 1.22079 0.94338 0.95744 0.94836 1.21239 0.95520 1.00465 0.92487 0.89497 1.21902 1.00289 0.94049 0.90295 1.58756 1.22165 1.52895 1.04291 0.93053 0.92997 0.92501 0.91185 0.92274 0.89326 0.96540 0.95436 1.00108 0.92693 0.96651 0.91495 0.90883 0.96131 0.85307 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.90 37.16 0.33 -1.30 16 2 C -0.09 -1.19 2.29 -90.50 -0.21 -1.39 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -1.73 5.38 -26.65 -0.14 -1.87 16 5 C 0.06 1.23 5.30 -3.83 -0.02 1.21 16 6 N -0.52 -11.24 4.65 -236.11 -1.10 -12.34 16 7 C 0.16 4.03 3.79 -4.98 -0.02 4.01 16 8 C -0.51 -14.63 8.99 -34.44 -0.31 -14.94 16 9 H 0.08 2.53 7.38 -52.49 -0.39 2.15 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 12 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 16 C 0.06 1.03 4.50 -3.83 -0.02 1.02 16 17 C -0.08 -1.14 2.06 -90.54 -0.19 -1.33 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C 0.07 0.79 6.08 -3.82 -0.02 0.77 16 20 N -0.85 -9.96 9.62 -10.37 -0.10 -10.06 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.52 6.41 -51.93 -0.33 0.19 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.95 6.72 -51.93 -0.35 1.60 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.03 0.69 7.04 -51.93 -0.37 0.33 16 29 H -0.02 -0.47 7.55 -51.93 -0.39 -0.86 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 1.16 6.60 -51.93 -0.34 0.82 16 33 H 0.07 0.82 6.27 -51.93 -0.33 0.49 16 34 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 3.11 9.08 -39.29 -0.36 2.76 16 36 H 0.34 4.09 7.28 -39.29 -0.29 3.80 16 LS Contribution 275.09 15.07 4.15 4.15 Total: -1.00 -30.49 275.09 -7.75 -38.24 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.11 Total: 1.91 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.69 Total: -11.94 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.42 Total: -49.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.49 -7.75 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167662047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.106 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds