Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47025 * 2 1 4 4 C 1.50702 * 109.47246 * 240.00113 * 2 1 3 5 5 H 1.08001 * 119.99750 * 239.99546 * 4 2 1 6 6 C 1.37873 * 119.99966 * 60.00040 * 4 2 1 7 7 N 1.31506 * 120.00134 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47442 * 89.99319 * 8 6 4 10 10 H 1.48501 * 109.46999 * 209.99850 * 8 6 4 11 11 H 1.48507 * 109.46892 * 329.99158 * 8 6 4 12 12 N 1.46898 * 109.47091 * 119.99601 * 2 1 3 13 13 C 1.46964 * 110.99861 * 176.20149 * 12 2 1 14 14 C 1.53045 * 109.36171 * 183.19007 * 13 12 2 15 15 N 1.46954 * 109.36781 * 301.59680 * 14 13 12 16 16 C 1.46898 * 111.00402 * 183.19059 * 15 14 13 17 17 C 1.46964 * 110.87851 * 59.32304 * 15 14 13 18 18 H 1.09002 * 109.50550 * 60.65448 * 17 15 14 19 19 C 1.52997 * 109.49017 * 180.71067 * 17 15 14 20 20 C 1.46958 * 111.00200 * 300.00375 * 12 2 1 21 21 H 1.08991 * 109.47186 * 300.00049 * 1 2 3 22 22 H 1.08997 * 109.47194 * 60.00223 * 1 2 3 23 23 H 1.08998 * 109.46520 * 179.97438 * 1 2 3 24 24 H 0.97006 * 120.00330 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.48940 * 303.15837 * 13 12 2 26 26 H 1.08997 * 109.48405 * 63.20481 * 13 12 2 27 27 H 1.09001 * 109.48893 * 61.57062 * 14 13 12 28 28 H 1.09010 * 109.48672 * 181.63503 * 14 13 12 29 29 H 1.09008 * 109.47304 * 296.20561 * 16 15 14 30 30 H 1.09000 * 109.46935 * 56.20142 * 16 15 14 31 31 H 1.08994 * 109.47397 * 176.20752 * 16 15 14 32 32 H 1.09002 * 109.47153 * 179.89123 * 19 17 15 33 33 H 1.09001 * 109.46832 * 59.89314 * 19 17 15 34 34 H 1.09004 * 109.47261 * 299.89295 * 19 17 15 35 35 H 1.09000 * 109.48753 * 56.84479 * 20 12 2 36 36 H 1.09004 * 109.48379 * 296.77690 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.3430 -2.1618 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6296 -1.7582 -3.7122 12 7 2.0197 -0.6924 1.1995 13 6 3.4860 -0.7912 1.1888 14 6 3.9498 -1.5863 2.4115 15 7 3.4787 -0.9199 3.6336 16 6 3.9683 -1.6123 4.8331 17 6 2.0124 -0.8211 3.6442 18 1 1.5800 -1.8212 3.6131 19 6 1.5580 -0.1080 4.9193 20 6 1.5484 -0.0260 2.4216 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 0.7082 1.1609 -3.4844 25 1 3.8096 -1.2993 0.2804 26 1 3.9180 0.2090 1.2198 27 1 3.5397 -2.5952 2.3662 28 1 5.0387 -1.6361 2.4212 29 1 3.5505 -2.6186 4.8678 30 1 5.0562 -1.6717 4.7997 31 1 3.6616 -1.0608 5.7217 32 1 0.4706 -0.0332 4.9260 33 1 1.9912 0.8917 4.9505 34 1 1.8886 -0.6745 5.7900 35 1 0.4596 0.0237 2.4118 36 1 1.9586 0.9829 2.4668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216558483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 11.686941 kcal Electronic energy + Delta-G solvation = -15079.714753 eV Core-core repulsion = 12791.908611 eV Total energy + Delta-G solvation = -2287.806142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.95585 -35.61859 -32.61470 -32.05556 -29.68961 -27.07332 -26.44886 -24.93385 -23.15398 -21.56586 -19.75921 -19.01137 -16.25989 -15.66469 -15.18523 -14.51754 -14.38770 -14.15538 -13.47459 -13.33951 -12.64018 -12.56083 -11.92346 -11.78115 -11.58056 -11.54896 -11.27280 -10.97540 -10.66599 -10.56976 -10.44001 -10.35388 -10.07252 -9.91457 -9.53442 -8.81278 -8.39681 -8.02769 -7.11615 -5.99075 -4.03661 3.31959 3.38197 3.41205 4.21954 4.42114 4.95677 5.22085 5.31599 5.33453 5.47827 5.59089 5.66314 5.82391 5.88886 5.93797 6.00108 6.05934 6.13376 6.25483 6.32598 6.56850 6.68930 6.77584 6.89292 7.08514 7.15696 7.36980 7.41726 7.57027 7.77519 7.85004 8.24777 8.36189 8.64251 9.02871 9.61324 11.07767 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048434 B = 0.008436 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.962234 B = 3318.280486 C = 3766.015853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.536 5.536 13 C 0.067 3.933 14 C 0.057 3.943 15 N -0.541 5.541 16 C 0.023 3.977 17 C 0.083 3.917 18 H 0.044 0.956 19 C -0.144 4.144 20 C 0.060 3.940 21 H 0.008 0.992 22 H 0.085 0.915 23 H 0.033 0.967 24 H 0.260 0.740 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -2.892 11.420 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.062 4.062 14 C -0.071 4.071 15 N -0.266 5.266 16 C -0.125 4.125 17 C -0.026 4.026 18 H 0.062 0.938 19 C -0.202 4.202 20 C -0.069 4.069 21 H 0.027 0.973 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.915 -2.769 11.254 11.950 hybrid contribution 0.286 -0.439 -0.860 1.007 sum 3.201 -3.208 10.394 11.339 Atomic orbital electron populations 1.21834 0.97763 0.99552 0.99882 1.19221 0.92273 0.92010 0.85813 0.98406 1.21152 1.31014 1.12205 0.89818 0.91937 1.24932 0.95243 0.95059 0.99003 1.69893 1.36956 1.23038 1.23370 0.86529 0.79204 0.79293 0.82551 1.20705 1.21337 1.19941 1.62277 1.08642 1.52804 1.02443 1.21999 0.89267 0.98405 0.96541 1.22255 0.98877 0.96234 0.89692 1.62195 1.10448 1.51796 1.02199 1.22379 1.00139 0.96254 0.93731 1.21705 0.86959 0.98484 0.95406 0.93808 1.21867 1.00835 1.01034 0.96498 1.22143 0.99883 0.95179 0.89668 0.97316 0.89675 0.94774 0.93004 0.89312 0.95406 0.94568 0.91281 0.96139 0.91939 0.91458 0.92253 0.92044 0.92848 0.90662 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.74 37.16 0.32 -2.97 16 2 C 0.21 5.50 2.06 -68.86 -0.14 5.35 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.50 -13.90 7.89 -34.44 -0.27 -14.17 16 5 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.54 -11.99 4.57 -227.87 -1.04 -13.03 16 13 C 0.07 1.37 5.33 -3.77 -0.02 1.35 16 14 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 15 N -0.54 -8.66 4.78 -234.73 -1.12 -9.79 16 16 C 0.02 0.29 9.13 60.06 0.55 0.84 16 17 C 0.08 1.35 2.56 -67.65 -0.17 1.18 16 18 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.14 -1.88 8.86 37.16 0.33 -1.55 16 20 C 0.06 1.17 4.60 -3.77 -0.02 1.15 16 21 H 0.01 0.18 6.34 -51.93 -0.33 -0.15 16 22 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.09 1.93 6.14 -51.93 -0.32 1.61 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.04 8.13 -51.92 -0.42 0.61 16 29 H 0.02 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.76 6.25 -51.93 -0.32 0.43 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 35 H 0.08 1.44 6.14 -51.93 -0.32 1.12 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 273.19 15.07 4.12 4.12 Total: -1.00 -28.74 273.19 -8.04 -36.78 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.06 Total: -3.09 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 0.46 Total: -6.32 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.54 Total: -47.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.74 -8.04 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216558483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds