Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47025 * 2 1 4 4 C 1.50702 * 109.47246 * 240.00113 * 2 1 3 5 5 H 1.08001 * 119.99750 * 239.99546 * 4 2 1 6 6 C 1.37873 * 119.99966 * 60.00040 * 4 2 1 7 7 N 1.31506 * 120.00134 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99886 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47442 * 89.99319 * 8 6 4 10 10 H 1.48501 * 109.46999 * 209.99850 * 8 6 4 11 11 H 1.48507 * 109.46892 * 329.99158 * 8 6 4 12 12 N 1.46898 * 109.47091 * 119.99601 * 2 1 3 13 13 C 1.46964 * 110.99861 * 176.20149 * 12 2 1 14 14 C 1.53045 * 109.36171 * 183.19007 * 13 12 2 15 15 N 1.46954 * 109.36781 * 301.59680 * 14 13 12 16 16 C 1.46898 * 111.00402 * 183.19059 * 15 14 13 17 17 C 1.46964 * 110.87851 * 59.32304 * 15 14 13 18 18 H 1.09002 * 109.50550 * 60.65448 * 17 15 14 19 19 C 1.52997 * 109.49017 * 180.71067 * 17 15 14 20 20 C 1.46958 * 111.00200 * 300.00375 * 12 2 1 21 21 H 1.08991 * 109.47186 * 300.00049 * 1 2 3 22 22 H 1.08997 * 109.47194 * 60.00223 * 1 2 3 23 23 H 1.08998 * 109.46520 * 179.97438 * 1 2 3 24 24 H 0.97006 * 120.00330 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.48940 * 303.15837 * 13 12 2 26 26 H 1.08997 * 109.48405 * 63.20481 * 13 12 2 27 27 H 1.09001 * 109.48893 * 61.57062 * 14 13 12 28 28 H 1.09010 * 109.48672 * 181.63503 * 14 13 12 29 29 H 1.09008 * 109.47304 * 296.20561 * 16 15 14 30 30 H 1.09000 * 109.46935 * 56.20142 * 16 15 14 31 31 H 1.08994 * 109.47397 * 176.20752 * 16 15 14 32 32 H 1.09002 * 109.47153 * 179.89123 * 19 17 15 33 33 H 1.09001 * 109.46832 * 59.89314 * 19 17 15 34 34 H 1.09004 * 109.47261 * 299.89295 * 19 17 15 35 35 H 1.09000 * 109.48753 * 56.84479 * 20 12 2 36 36 H 1.09004 * 109.48379 * 296.77690 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0080 9 1 1.3430 -2.1618 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6296 -1.7582 -3.7122 12 7 2.0197 -0.6924 1.1995 13 6 3.4860 -0.7912 1.1888 14 6 3.9498 -1.5863 2.4115 15 7 3.4787 -0.9199 3.6336 16 6 3.9683 -1.6123 4.8331 17 6 2.0124 -0.8211 3.6442 18 1 1.5800 -1.8212 3.6131 19 6 1.5580 -0.1080 4.9193 20 6 1.5484 -0.0260 2.4216 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 0.7082 1.1609 -3.4844 25 1 3.8096 -1.2993 0.2804 26 1 3.9180 0.2090 1.2198 27 1 3.5397 -2.5952 2.3662 28 1 5.0387 -1.6361 2.4212 29 1 3.5505 -2.6186 4.8678 30 1 5.0562 -1.6717 4.7997 31 1 3.6616 -1.0608 5.7217 32 1 0.4706 -0.0332 4.9260 33 1 1.9912 0.8917 4.9505 34 1 1.8886 -0.6745 5.7900 35 1 0.4596 0.0237 2.4118 36 1 1.9586 0.9829 2.4668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216558483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = -8.540427 kcal Electronic energy + Delta-G solvation = -15080.591877 eV Core-core repulsion = 12791.908611 eV Total energy + Delta-G solvation = -2288.683266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42928 -37.30125 -34.58948 -33.39049 -31.49366 -28.59451 -27.98076 -26.74679 -24.63301 -23.06358 -21.58704 -20.51796 -18.35833 -17.33203 -16.50933 -16.24402 -15.87318 -15.59962 -15.09691 -15.01901 -14.36573 -13.88763 -13.58412 -13.14981 -12.96049 -12.89325 -12.79277 -12.69074 -12.50985 -12.22612 -12.15300 -12.01241 -11.94178 -11.71053 -11.14142 -10.83661 -10.51370 -9.27827 -8.96362 -8.12260 -6.24643 1.41937 1.42592 1.52946 2.41527 2.99966 3.14992 3.31576 3.94745 4.11419 4.16000 4.35354 4.41400 4.57259 4.65462 4.69774 4.71185 4.80548 4.85986 4.88620 4.96828 5.01662 5.06542 5.11841 5.16418 5.22021 5.36580 5.49104 5.70334 5.76588 6.11199 6.17968 6.24572 6.40969 6.72402 6.89716 7.44644 8.94069 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048434 B = 0.008436 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.962234 B = 3318.280486 C = 3766.015853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.042 1.042 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.542 5.542 13 C 0.068 3.932 14 C 0.068 3.932 15 N -0.553 5.553 16 C 0.024 3.976 17 C 0.088 3.912 18 H 0.039 0.961 19 C -0.136 4.136 20 C 0.060 3.940 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -4.024 12.783 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.110 3.890 3 H -0.025 1.025 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.267 5.267 13 C -0.061 4.061 14 C -0.060 4.060 15 N -0.279 5.279 16 C -0.123 4.123 17 C -0.021 4.021 18 H 0.056 0.944 19 C -0.194 4.194 20 C -0.069 4.069 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 3.530 -3.910 12.646 13.700 hybrid contribution 0.105 -0.052 -1.243 1.249 sum 3.635 -3.962 11.403 12.608 Atomic orbital electron populations 1.21644 0.97162 0.99232 0.99759 1.19034 0.92745 0.89965 0.87291 1.02487 1.21411 1.31237 1.12283 0.90917 0.92234 1.25745 0.95348 0.95743 1.01997 1.70023 1.37766 1.24218 1.24103 0.85495 0.78894 0.78200 0.78677 1.20066 1.20906 1.19187 1.62254 1.09762 1.52338 1.02322 1.21979 0.88197 0.97863 0.98055 1.22116 1.00147 0.95132 0.88624 1.62189 1.10160 1.52581 1.02976 1.22465 1.00997 0.96397 0.92455 1.21659 0.87389 0.97887 0.95168 0.94351 1.21817 1.01516 1.00707 0.95379 1.22231 0.99825 0.94913 0.89925 0.95138 0.92067 0.94958 0.92889 0.91083 0.97178 0.94757 0.88951 0.95580 0.90558 0.89735 0.91235 0.92348 0.90489 0.90691 0.96800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.74 71.98 0.63 -5.45 16 2 C 0.22 11.54 2.06 44.17 0.09 11.63 16 3 H -0.04 -2.55 8.14 -2.39 -0.02 -2.57 16 4 C -0.52 -29.36 7.89 25.60 0.20 -29.16 16 5 H 0.06 3.32 6.41 -2.91 -0.02 3.31 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.10 11.32 21.44 0.24 -53.86 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.54 -24.56 4.57 -874.85 -4.00 -28.56 16 13 C 0.07 2.82 5.33 86.31 0.46 3.28 16 14 C 0.07 2.21 5.62 86.31 0.49 2.69 16 15 N -0.55 -16.48 4.78 -896.54 -4.29 -20.77 16 16 C 0.02 0.52 9.13 127.69 1.17 1.69 16 17 C 0.09 2.69 2.56 44.92 0.12 2.81 16 18 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 19 C -0.14 -3.15 8.86 71.98 0.64 -2.52 16 20 C 0.06 2.30 4.60 86.31 0.40 2.70 16 21 H 0.03 1.36 6.34 -2.39 -0.02 1.34 16 22 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 25 H 0.07 3.16 6.14 -2.39 -0.01 3.15 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 2.56 8.13 -2.38 -0.02 2.54 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.08 1.55 6.25 -2.39 -0.01 1.53 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.44 6.36 -2.38 -0.02 1.42 16 35 H 0.07 2.84 6.14 -2.39 -0.01 2.83 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -62.34 273.19 -0.36 -62.70 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.03 Total: 5.54 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.63 Total: -11.30 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -8.04 Total: -103.18 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.34 -0.36 -62.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216558483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.158 kcal (2) G-P(sol) polarization free energy of solvation -62.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds