Wall clock time and date at job start Mon Mar 30 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47404 * 120.00181 * 2 1 3 5 5 H 1.07995 * 119.99695 * 119.99659 * 4 2 1 6 6 C 1.37872 * 120.00069 * 300.00160 * 4 2 1 7 7 N 1.31510 * 119.99999 * 179.97438 * 6 4 2 8 8 Si 1.86810 * 119.99962 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46946 * 90.00276 * 8 6 4 10 10 H 1.48495 * 109.47235 * 210.00242 * 8 6 4 11 11 H 1.48502 * 109.47074 * 330.00312 * 8 6 4 12 12 N 1.46904 * 109.46769 * 240.00299 * 2 1 3 13 13 C 1.46847 * 110.99584 * 183.95279 * 12 2 1 14 14 C 1.53037 * 109.52060 * 185.83631 * 13 12 2 15 15 C 1.53118 * 109.28177 * 300.82248 * 14 13 12 16 16 C 1.53118 * 109.16078 * 57.65486 * 15 14 13 17 17 H 1.09001 * 109.50621 * 62.32335 * 16 15 14 18 18 C 1.52998 * 109.50586 * 182.40799 * 16 15 14 19 19 N 1.46905 * 109.46978 * 294.99754 * 18 16 15 20 20 C 1.46846 * 110.99850 * 308.16062 * 12 2 1 21 21 H 1.09000 * 109.47066 * 299.99858 * 1 2 3 22 22 H 1.09006 * 109.47096 * 59.99549 * 1 2 3 23 23 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 24 24 H 0.97013 * 119.99877 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46526 * 65.83000 * 13 12 2 26 26 H 1.08993 * 109.45610 * 305.84756 * 13 12 2 27 27 H 1.09002 * 109.50730 * 180.87827 * 14 13 12 28 28 H 1.09001 * 109.50528 * 60.76145 * 14 13 12 29 29 H 1.08994 * 109.52220 * 297.75085 * 15 14 13 30 30 H 1.08998 * 109.57776 * 177.59001 * 15 14 13 31 31 H 1.09002 * 109.47288 * 174.99654 * 18 16 15 32 32 H 1.08995 * 109.47151 * 54.99714 * 18 16 15 33 33 H 1.00901 * 110.99869 * 180.02562 * 19 18 16 34 34 H 1.00896 * 110.99543 * 303.95346 * 19 18 16 35 35 H 1.09002 * 109.46027 * 54.15123 * 20 12 2 36 36 H 1.08998 * 109.46611 * 294.17560 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 3.4844 -0.7944 -1.1871 14 6 3.9670 -1.3878 -2.5127 15 6 3.3419 -2.7724 -2.7042 16 6 1.8165 -2.6450 -2.6648 17 1 1.4826 -2.0139 -3.4885 18 6 1.1845 -4.0322 -2.7954 19 7 1.4935 -4.5884 -4.1195 20 6 1.3963 -2.0152 -1.3348 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9033 -0.5281 4.4375 25 1 3.7967 -1.4393 -0.3657 26 1 3.9163 0.1975 -1.0547 27 1 5.0532 -1.4779 -2.4972 28 1 3.6670 -0.7365 -3.3336 29 1 3.6728 -3.4351 -1.9047 30 1 3.6485 -3.1815 -3.6669 31 1 0.1038 -3.9515 -2.6784 32 1 1.5856 -4.6883 -2.0230 33 1 1.0864 -5.5049 -4.2306 34 1 1.1887 -3.9663 -4.8530 35 1 0.3117 -1.9099 -1.3095 36 1 1.7184 -2.6543 -0.5126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217560305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:57 Heat of formation + Delta-G solvation = -3.206658 kcal Electronic energy + Delta-G solvation = -15106.805353 eV Core-core repulsion = 12818.353377 eV Total energy + Delta-G solvation = -2288.451977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.75338 -35.51718 -33.44282 -31.81152 -30.11435 -28.99894 -25.26250 -24.26825 -23.44918 -21.03316 -19.76394 -19.02730 -16.63284 -15.92426 -15.15116 -14.57312 -14.28853 -14.18751 -13.80329 -13.22921 -13.05970 -12.52416 -12.50442 -12.09772 -11.77135 -11.42726 -11.18582 -10.87058 -10.58639 -10.45819 -10.19844 -10.01673 -9.67342 -9.60811 -9.48578 -9.24491 -8.60177 -8.57696 -7.11036 -6.10654 -4.10994 3.25478 3.36593 3.39008 4.38121 4.58305 4.93410 5.21544 5.25011 5.34089 5.49338 5.72100 5.78613 5.97376 6.05701 6.16020 6.22572 6.32122 6.37366 6.43503 6.50336 6.56890 6.61661 6.73721 6.79463 6.85153 6.99997 7.05174 7.16633 7.25903 7.46006 7.59636 8.15919 8.21593 8.47285 8.91904 9.53116 11.02330 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042284 B = 0.008880 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.026449 B = 3152.511339 C = 3284.177531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.039 0.961 4 C -0.543 4.543 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.265 1.265 12 N -0.528 5.528 13 C 0.063 3.937 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.082 4.082 17 H 0.067 0.933 18 C 0.065 3.935 19 N -0.849 5.849 20 C 0.062 3.938 21 H 0.040 0.960 22 H 0.036 0.964 23 H 0.053 0.947 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.336 0.664 34 H 0.337 0.663 35 H 0.067 0.933 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -3.066 -12.248 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.066 3.934 3 H 0.057 0.943 4 C -0.581 4.581 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.190 1.190 12 N -0.252 5.252 13 C -0.066 4.066 14 C -0.156 4.156 15 C -0.139 4.139 16 C -0.101 4.101 17 H 0.086 0.914 18 C -0.066 4.066 19 N -0.378 5.378 20 C -0.067 4.067 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.085 0.915 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.092 -2.734 -12.212 12.562 hybrid contribution -1.464 0.282 0.997 1.794 sum -2.556 -2.452 -11.215 11.761 Atomic orbital electron populations 1.22230 0.98859 1.00694 0.98666 1.19700 0.91169 0.95039 0.87514 0.94311 1.21632 1.32600 1.14101 0.89792 0.90584 1.24990 0.95561 0.96598 0.95853 1.69922 1.45536 1.40317 0.97955 0.86824 0.80490 0.83757 0.76909 1.20694 1.22592 1.19035 1.62331 1.05369 1.17710 1.39801 1.21879 0.89013 1.00203 0.95491 1.21650 0.98798 0.96631 0.98527 1.21453 0.94541 0.96581 1.01343 1.21208 0.95981 0.94163 0.98767 0.91417 1.21829 0.97195 0.96541 0.91000 1.58721 1.67900 1.06925 1.04219 1.21966 0.99007 0.90899 0.94780 0.94181 0.94519 0.92819 0.92706 0.93766 0.91955 0.92599 0.92207 0.92833 0.91837 0.95734 0.91122 0.85253 0.85097 0.91456 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.17 37.16 0.30 -2.93 16 2 C 0.17 4.13 2.08 -68.86 -0.14 3.99 16 3 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 4 C -0.54 -15.00 7.79 -34.44 -0.27 -15.27 16 5 H 0.08 2.30 6.09 -52.49 -0.32 1.98 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.77 6.87 56.52 0.39 -6.38 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 12 N -0.53 -11.04 4.71 -228.08 -1.07 -12.11 16 13 C 0.06 1.24 4.97 -3.83 -0.02 1.23 16 14 C -0.12 -1.91 6.09 -26.65 -0.16 -2.07 16 15 C -0.10 -1.58 5.14 -26.61 -0.14 -1.71 16 16 C -0.08 -1.27 2.49 -90.54 -0.23 -1.50 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 18 C 0.07 0.87 6.18 -3.82 -0.02 0.85 16 19 N -0.85 -9.47 9.13 -10.37 -0.09 -9.56 16 20 C 0.06 1.19 4.02 -3.83 -0.02 1.18 16 21 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 1.15 6.19 -51.93 -0.32 0.82 16 24 H 0.26 7.56 8.31 -40.81 -0.34 7.22 16 25 H 0.04 0.99 6.46 -51.93 -0.34 0.66 16 26 H 0.06 1.25 8.12 -51.93 -0.42 0.82 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.92 7.83 -51.93 -0.41 0.52 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.34 3.09 9.08 -39.29 -0.36 2.73 16 34 H 0.34 3.37 8.99 -39.29 -0.35 3.01 16 35 H 0.07 1.27 5.84 -51.93 -0.30 0.96 16 36 H 0.04 0.88 7.17 -51.93 -0.37 0.50 16 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -29.52 266.61 -7.18 -36.70 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.87 Total: 3.99 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.79 Total: -14.26 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.40 Total: -48.34 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.52 -7.18 -36.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217560305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.496 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds