Wall clock time and date at job start Mon Mar 30 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.50699 * 109.47404 * 120.00181 * 2 1 3 5 5 H 1.07995 * 119.99695 * 119.99659 * 4 2 1 6 6 C 1.37872 * 120.00069 * 300.00160 * 4 2 1 7 7 N 1.31510 * 119.99999 * 179.97438 * 6 4 2 8 8 Si 1.86810 * 119.99962 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46946 * 90.00276 * 8 6 4 10 10 H 1.48495 * 109.47235 * 210.00242 * 8 6 4 11 11 H 1.48502 * 109.47074 * 330.00312 * 8 6 4 12 12 N 1.46904 * 109.46769 * 240.00299 * 2 1 3 13 13 C 1.46847 * 110.99584 * 183.95279 * 12 2 1 14 14 C 1.53037 * 109.52060 * 185.83631 * 13 12 2 15 15 C 1.53118 * 109.28177 * 300.82248 * 14 13 12 16 16 C 1.53118 * 109.16078 * 57.65486 * 15 14 13 17 17 H 1.09001 * 109.50621 * 62.32335 * 16 15 14 18 18 C 1.52998 * 109.50586 * 182.40799 * 16 15 14 19 19 N 1.46905 * 109.46978 * 294.99754 * 18 16 15 20 20 C 1.46846 * 110.99850 * 308.16062 * 12 2 1 21 21 H 1.09000 * 109.47066 * 299.99858 * 1 2 3 22 22 H 1.09006 * 109.47096 * 59.99549 * 1 2 3 23 23 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 24 24 H 0.97013 * 119.99877 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.46526 * 65.83000 * 13 12 2 26 26 H 1.08993 * 109.45610 * 305.84756 * 13 12 2 27 27 H 1.09002 * 109.50730 * 180.87827 * 14 13 12 28 28 H 1.09001 * 109.50528 * 60.76145 * 14 13 12 29 29 H 1.08994 * 109.52220 * 297.75085 * 15 14 13 30 30 H 1.08998 * 109.57776 * 177.59001 * 15 14 13 31 31 H 1.09002 * 109.47288 * 174.99654 * 18 16 15 32 32 H 1.08995 * 109.47151 * 54.99714 * 18 16 15 33 33 H 1.00901 * 110.99869 * 180.02562 * 19 18 16 34 34 H 1.00896 * 110.99543 * 303.95346 * 19 18 16 35 35 H 1.09002 * 109.46027 * 54.15123 * 20 12 2 36 36 H 1.08998 * 109.46611 * 294.17560 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8597 3.5564 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 3.4844 -0.7944 -1.1871 14 6 3.9670 -1.3878 -2.5127 15 6 3.3419 -2.7724 -2.7042 16 6 1.8165 -2.6450 -2.6648 17 1 1.4826 -2.0139 -3.4885 18 6 1.1845 -4.0322 -2.7954 19 7 1.4935 -4.5884 -4.1195 20 6 1.3963 -2.0152 -1.3348 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9033 -0.5281 4.4375 25 1 3.7967 -1.4393 -0.3657 26 1 3.9163 0.1975 -1.0547 27 1 5.0532 -1.4779 -2.4972 28 1 3.6670 -0.7365 -3.3336 29 1 3.6728 -3.4351 -1.9047 30 1 3.6485 -3.1815 -3.6669 31 1 0.1038 -3.9515 -2.6784 32 1 1.5856 -4.6883 -2.0230 33 1 1.0864 -5.5049 -4.2306 34 1 1.1887 -3.9663 -4.8530 35 1 0.3117 -1.9099 -1.3095 36 1 1.7184 -2.6543 -0.5126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217560305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:57 Heat of formation + Delta-G solvation = -26.376297 kcal Electronic energy + Delta-G solvation = -15107.810064 eV Core-core repulsion = 12818.353377 eV Total energy + Delta-G solvation = -2289.456688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29881 -36.97745 -34.98748 -33.75253 -31.43242 -30.70344 -27.24564 -25.59894 -25.09299 -22.42882 -21.39119 -20.68591 -18.61890 -17.45656 -16.69492 -15.86561 -15.80729 -15.55430 -15.34148 -14.95817 -14.73504 -14.18496 -14.12100 -13.77141 -13.20111 -13.03255 -12.76803 -12.66243 -12.37169 -11.96464 -11.82602 -11.58243 -11.45225 -11.38961 -11.04297 -10.95799 -10.74594 -9.52220 -8.93409 -8.32891 -6.37620 1.28546 1.34750 1.45425 2.29632 3.02824 3.21375 3.73580 3.94324 4.04429 4.17056 4.38244 4.50941 4.54604 4.59085 4.67449 4.71518 4.77114 4.80656 4.89930 5.03194 5.07250 5.12482 5.16759 5.25565 5.32102 5.43511 5.46138 5.51722 5.64217 6.16191 6.26358 6.39126 6.51872 6.69459 6.70915 7.30724 8.83831 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042284 B = 0.008880 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.026449 B = 3152.511339 C = 3284.177531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.172 3.828 3 H 0.033 0.967 4 C -0.538 4.538 5 H 0.032 0.968 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.246 1.246 12 N -0.521 5.521 13 C 0.062 3.938 14 C -0.108 4.108 15 C -0.097 4.097 16 C -0.073 4.073 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.848 5.848 20 C 0.065 3.935 21 H 0.034 0.966 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.349 0.651 34 H 0.348 0.652 35 H 0.073 0.927 36 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -2.256 -14.739 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.064 3.936 3 H 0.050 0.950 4 C -0.577 4.577 5 H 0.051 0.949 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.780 3.220 9 H -0.191 1.191 10 H -0.228 1.228 11 H -0.170 1.170 12 N -0.244 5.244 13 C -0.067 4.067 14 C -0.146 4.146 15 C -0.135 4.135 16 C -0.092 4.092 17 H 0.099 0.901 18 C -0.059 4.059 19 N -0.379 5.379 20 C -0.064 4.064 21 H 0.052 0.948 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -2.309 -1.938 -14.745 15.050 hybrid contribution -1.001 -0.055 1.753 2.020 sum -3.311 -1.993 -12.991 13.554 Atomic orbital electron populations 1.22134 0.96812 1.01210 0.99829 1.19646 0.92787 0.94372 0.86836 0.94964 1.21856 1.31366 1.12709 0.91760 0.94936 1.25874 0.97204 0.99996 0.95390 1.70077 1.47707 1.42571 0.98628 0.85797 0.79063 0.79910 0.77274 1.19150 1.22817 1.17015 1.62400 1.05836 1.18523 1.37623 1.21918 0.88632 0.99424 0.96686 1.21598 0.99828 0.96884 0.96299 1.21426 0.94547 0.95870 1.01627 1.21123 0.96052 0.95389 0.96618 0.90057 1.21632 0.97275 0.94959 0.92012 1.58627 1.68192 1.07848 1.03245 1.22005 0.99111 0.89470 0.95770 0.94771 0.91427 0.92745 0.92644 0.97662 0.92414 0.90962 0.90574 0.94759 0.89749 0.95000 0.92586 0.83725 0.83914 0.90905 0.97965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.17 71.98 0.59 -5.37 16 2 C 0.17 8.13 2.08 44.17 0.09 8.22 16 3 H 0.03 1.58 7.20 -2.39 -0.02 1.56 16 4 C -0.54 -30.74 7.79 25.60 0.20 -30.54 16 5 H 0.03 2.10 6.09 -2.91 -0.02 2.08 16 6 C 0.01 0.76 5.45 84.65 0.46 1.22 16 7 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 8 Si 0.95 45.23 24.37 68.60 1.67 46.90 16 9 H -0.27 -11.94 6.87 99.48 0.68 -11.26 16 10 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 11 H -0.25 -10.86 6.53 99.48 0.65 -10.21 16 12 N -0.52 -21.48 4.71 -875.50 -4.12 -25.60 16 13 C 0.06 2.49 4.97 86.33 0.43 2.92 16 14 C -0.11 -3.32 6.09 30.65 0.19 -3.13 16 15 C -0.10 -2.86 5.14 30.67 0.16 -2.70 16 16 C -0.07 -2.12 2.49 -10.74 -0.03 -2.14 16 17 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.07 1.81 6.18 86.30 0.53 2.34 16 19 N -0.85 -16.43 9.13 -186.71 -1.70 -18.13 16 20 C 0.07 2.47 4.02 86.33 0.35 2.82 16 21 H 0.03 1.46 3.27 -2.39 -0.01 1.45 16 22 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 23 H 0.05 2.24 6.19 -2.39 -0.01 2.22 16 24 H 0.26 15.70 8.31 -92.70 -0.77 14.92 16 25 H 0.01 0.24 6.46 -2.39 -0.02 0.23 16 26 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 2.19 7.83 -2.39 -0.02 2.17 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.35 5.43 9.08 -89.69 -0.81 4.61 16 34 H 0.35 5.68 8.99 -89.70 -0.81 4.87 16 35 H 0.07 2.65 5.84 -2.39 -0.01 2.64 16 36 H 0.00 0.09 7.17 -2.39 -0.02 0.07 16 Total: -1.00 -65.24 266.61 -1.52 -66.76 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.63 Total: 16.17 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 2.97 Total: -26.37 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -5.53 Total: -103.46 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Total: -65.24 -1.52 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217560305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds