Wall clock time and date at job start Mon Mar 30 2020 03:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46848 * 111.00620 * 170.78878 * 12 2 1 14 14 C 1.53027 * 109.52734 * 185.84314 * 13 12 2 15 15 C 1.53119 * 109.27589 * 300.81990 * 14 13 12 16 16 C 1.53118 * 109.16063 * 57.65638 * 15 14 13 17 17 H 1.09004 * 109.50156 * 62.28818 * 16 15 14 18 18 C 1.53005 * 109.53585 * 182.38509 * 16 15 14 19 19 N 1.46906 * 109.47016 * 294.82300 * 18 16 15 20 20 C 1.46845 * 111.00067 * 295.00403 * 12 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46004 * 305.86043 * 13 12 2 26 26 H 1.09004 * 109.45680 * 65.82045 * 13 12 2 27 27 H 1.09003 * 109.50611 * 180.88266 * 14 13 12 28 28 H 1.08994 * 109.53914 * 60.77825 * 14 13 12 29 29 H 1.09003 * 109.52765 * 297.74557 * 15 14 13 30 30 H 1.09007 * 109.57388 * 177.59199 * 15 14 13 31 31 H 1.08995 * 109.47047 * 54.81569 * 18 16 15 32 32 H 1.09002 * 109.47346 * 174.82403 * 18 16 15 33 33 H 1.00899 * 110.99815 * 180.02562 * 19 18 16 34 34 H 1.00901 * 110.99832 * 303.95280 * 19 18 16 35 35 H 1.08999 * 109.45987 * 294.17157 * 20 12 2 36 36 H 1.08995 * 109.46287 * 54.15083 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4710 -0.9051 1.1287 14 6 3.9223 -1.7533 2.3197 15 6 3.5558 -1.0336 3.6206 16 6 2.0458 -0.7813 3.6471 17 1 1.5173 -1.7345 3.6350 18 6 1.6782 -0.0096 4.9162 19 7 1.9489 -0.8457 6.0934 20 6 1.6489 0.0388 2.4176 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.7176 -1.4213 0.2010 26 1 3.9808 0.0581 1.1547 27 1 5.0018 -1.8978 2.2755 28 1 3.4238 -2.7221 2.2870 29 1 4.0851 -0.0821 3.6722 30 1 3.8366 -1.6532 4.4724 31 1 2.2741 0.9013 4.9729 32 1 0.6198 0.2496 4.8902 33 1 1.7137 -0.3582 6.9449 34 1 1.4576 -1.7250 6.0330 35 1 2.1672 0.9974 2.4376 36 1 0.5721 0.2079 2.4261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217560382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:00 Heat of formation + Delta-G solvation = -30.494190 kcal Electronic energy + Delta-G solvation = -14912.450837 eV Core-core repulsion = 12622.815584 eV Total energy + Delta-G solvation = -2289.635253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15800 -36.88879 -35.02905 -33.46785 -31.47998 -30.19211 -27.45611 -25.53014 -24.80412 -22.44895 -21.45133 -20.55616 -18.32249 -17.39505 -16.53242 -16.00960 -15.74268 -15.57570 -15.29406 -14.82846 -14.37620 -14.18761 -13.78509 -13.37847 -13.14782 -12.95820 -12.82317 -12.50192 -12.23686 -12.13962 -11.97726 -11.82502 -11.47158 -11.41030 -10.91133 -10.71143 -10.49620 -9.52701 -8.91086 -8.12143 -6.24348 1.41963 1.43969 1.51520 2.41751 3.15090 3.28282 3.72195 3.96819 4.03982 4.15687 4.36697 4.54207 4.58211 4.64136 4.69514 4.80056 4.81723 4.94156 5.02457 5.04563 5.05997 5.22652 5.29041 5.29739 5.45417 5.50332 5.60292 5.73262 5.81269 6.23822 6.26664 6.42465 6.67939 6.79004 6.91680 7.45048 8.94089 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052279 B = 0.007823 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.459162 B = 3578.243335 C = 3970.308380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.215 3.785 3 H -0.043 1.043 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.537 5.537 13 C 0.062 3.938 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.072 4.072 17 H 0.070 0.930 18 C 0.074 3.926 19 N -0.849 5.849 20 C 0.059 3.941 21 H 0.028 0.972 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.003 0.997 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.350 0.650 34 H 0.346 0.654 35 H 0.009 0.991 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -3.234 13.100 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.262 5.262 13 C -0.066 4.066 14 C -0.148 4.148 15 C -0.132 4.132 16 C -0.092 4.092 17 H 0.089 0.911 18 C -0.057 4.057 19 N -0.380 5.380 20 C -0.070 4.070 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.021 0.979 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.027 0.973 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.687 -3.546 12.736 13.491 hybrid contribution -0.577 0.919 -1.091 1.539 sum 2.110 -2.627 11.645 12.123 Atomic orbital electron populations 1.21612 0.97245 0.99175 0.99532 1.19037 0.92742 0.90009 0.87451 1.02556 1.21471 1.31272 1.12434 0.90992 0.91970 1.25748 0.95311 0.95760 1.02004 1.70018 1.37754 1.24212 1.24137 0.85562 0.78710 0.78717 0.78355 1.19553 1.20904 1.19663 1.61973 1.13067 1.49025 1.02107 1.21999 0.87793 0.97415 0.99402 1.21612 1.00632 0.98809 0.93796 1.21425 0.94643 1.00021 0.97103 1.21091 0.97159 0.98680 0.92241 0.91126 1.21644 0.98276 0.96020 0.89792 1.58646 1.66824 1.08336 1.04170 1.22103 0.99868 0.94263 0.90752 0.95358 0.94984 0.92194 0.92916 0.91715 0.97894 0.90605 0.91755 0.93442 0.89885 0.91542 0.95237 0.83641 0.84113 0.97286 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.88 71.98 0.64 -5.32 16 2 C 0.21 11.39 2.07 44.17 0.09 11.48 16 3 H -0.04 -2.57 8.13 -2.39 -0.02 -2.59 16 4 C -0.52 -29.50 7.87 25.60 0.20 -29.29 16 5 H 0.06 3.46 6.04 -2.91 -0.02 3.44 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.85 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.54 -23.90 4.52 -875.55 -3.95 -27.85 16 13 C 0.06 2.56 5.15 86.32 0.44 3.00 16 14 C -0.11 -3.49 6.09 30.64 0.19 -3.30 16 15 C -0.09 -2.66 5.15 30.67 0.16 -2.50 16 16 C -0.07 -2.10 2.49 -10.74 -0.03 -2.12 16 17 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 18 C 0.07 1.72 6.18 86.30 0.53 2.25 16 19 N -0.85 -15.72 9.14 -186.70 -1.71 -17.43 16 20 C 0.06 2.20 4.57 86.33 0.39 2.60 16 21 H 0.03 1.26 6.40 -2.39 -0.02 1.24 16 22 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.06 2.91 5.74 -2.39 -0.01 2.90 16 26 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 2.09 7.84 -2.38 -0.02 2.07 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.35 5.02 9.08 -89.69 -0.81 4.21 16 34 H 0.35 5.76 8.99 -89.69 -0.81 4.96 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.06 2.43 6.18 -2.39 -0.01 2.41 16 Total: -1.00 -61.58 275.64 -0.88 -62.46 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.56 Total: 12.62 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.07 Total: -22.19 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -5.42 Total: -99.13 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.58 -0.88 -62.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217560382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.965 kcal (2) G-P(sol) polarization free energy of solvation -61.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds