Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 N 1.46904 * 109.47084 * 119.99971 * 2 1 3 5 5 C 1.46955 * 110.99824 * 51.20254 * 4 2 1 6 6 C 1.53051 * 109.36422 * 183.18558 * 5 4 2 7 7 H 1.09005 * 109.48877 * 61.56815 * 6 5 4 8 8 C 1.50697 * 109.48871 * 181.62549 * 6 5 4 9 9 H 1.07999 * 120.00159 * 359.89681 * 8 6 5 10 10 C 1.37878 * 119.99929 * 179.88933 * 8 6 5 11 11 N 1.31514 * 120.00255 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 120.00084 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47097 * 90.00293 * 12 10 8 14 14 H 1.48502 * 109.47102 * 210.00442 * 12 10 8 15 15 H 1.48498 * 109.46855 * 330.00448 * 12 10 8 16 16 N 1.46955 * 109.36721 * 301.59858 * 6 5 4 17 17 C 1.46955 * 110.87898 * 59.32001 * 16 6 5 18 18 C 1.46959 * 111.00007 * 174.99635 * 4 2 1 19 19 H 1.09004 * 109.48713 * 56.84728 * 18 4 2 20 20 C 1.52999 * 109.50976 * 296.79550 * 18 4 2 21 21 H 1.09002 * 109.47025 * 299.99599 * 1 2 3 22 22 H 1.08996 * 109.46855 * 59.99659 * 1 2 3 23 23 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47460 * 240.00091 * 2 1 3 25 25 H 1.09001 * 109.47321 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47451 * 299.99976 * 3 2 1 27 27 H 1.09002 * 109.46760 * 60.00238 * 3 2 1 28 28 H 1.09001 * 109.48648 * 303.15296 * 5 4 2 29 29 H 1.09001 * 109.49302 * 63.19805 * 5 4 2 30 30 H 0.96998 * 120.00052 * 179.97438 * 11 10 8 31 31 H 1.00901 * 110.99738 * 295.45421 * 16 6 5 32 32 H 1.08998 * 109.49377 * 60.64707 * 17 16 6 33 33 H 1.09000 * 109.48764 * 180.69356 * 17 16 6 34 34 H 1.09005 * 109.46577 * 300.09322 * 20 18 4 35 35 H 1.08997 * 109.46952 * 60.09391 * 20 18 4 36 36 H 1.08999 * 109.46882 * 180.10222 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3847 -2.0100 1.3430 6 6 1.8603 -2.6637 2.6426 7 1 1.5616 -2.0471 3.4903 8 6 1.2418 -4.0317 2.7729 9 1 0.5748 -4.3980 2.0066 10 6 1.5278 -4.8159 3.8703 11 7 2.3398 -4.3697 4.8037 12 14 0.7617 -6.5120 4.0316 13 1 1.6478 -7.5181 3.3929 14 1 0.5915 -6.8436 5.4690 15 1 -0.5632 -6.5224 3.3609 16 7 3.3244 -2.7878 2.6183 17 6 3.9594 -1.4703 2.4748 18 6 3.4838 -0.8166 1.1751 19 1 3.9311 0.1729 1.0809 20 6 3.9035 -1.6819 -0.0149 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.3016 -1.8906 1.3711 29 1 1.6592 -2.6402 0.4970 30 1 2.5406 -4.9213 5.5760 31 1 3.6221 -3.4144 1.8855 32 1 3.6846 -0.8400 3.3205 33 1 5.0424 -1.5897 2.4470 34 1 3.4554 -2.6711 0.0793 35 1 3.5646 -1.2161 -0.9402 36 1 4.9894 -1.7750 -0.0312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218989995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = 8.108129 kcal Electronic energy + Delta-G solvation = -15333.771129 eV Core-core repulsion = 13045.809798 eV Total energy + Delta-G solvation = -2287.961331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25771 -35.05515 -32.85860 -30.87040 -30.26101 -27.12725 -27.04731 -24.55170 -23.73861 -21.16409 -20.03377 -18.09443 -16.64365 -15.78787 -14.93016 -14.54262 -14.04938 -13.53277 -13.41559 -13.28903 -12.72449 -12.42888 -12.01916 -11.99516 -11.72009 -11.54205 -11.13210 -10.94492 -10.85994 -10.71874 -10.62823 -10.41103 -10.08559 -9.81450 -9.59077 -8.85231 -8.36562 -7.66998 -6.69004 -5.83035 -3.97894 3.35867 3.42973 3.45301 4.38624 4.56239 5.19142 5.26928 5.31043 5.45649 5.61037 5.64474 5.75587 5.81163 5.86789 6.00855 6.04106 6.12380 6.18508 6.20430 6.28499 6.40172 6.46952 6.50470 6.54692 6.66406 6.90450 6.95111 7.49007 7.78207 7.84108 7.98195 8.30006 8.67196 9.01836 9.18635 9.70687 11.21231 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.009371 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.375576 B = 2987.326753 C = 3335.620498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 C -0.140 4.140 4 N -0.524 5.524 5 C 0.024 3.976 6 C 0.228 3.772 7 H 0.044 0.956 8 C -0.540 4.540 9 H 0.052 0.948 10 C 0.084 3.916 11 N -0.845 5.845 12 Si 0.882 3.118 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.647 5.647 17 C 0.065 3.935 18 C 0.041 3.959 19 H 0.070 0.930 20 C -0.186 4.186 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.255 0.745 31 H 0.317 0.683 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 7.615 -8.563 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 C -0.198 4.198 4 N -0.249 5.249 5 C -0.105 4.105 6 C 0.120 3.880 7 H 0.062 0.938 8 C -0.579 4.579 9 H 0.070 0.930 10 C -0.123 4.123 11 N -0.480 5.480 12 Si 0.710 3.290 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.201 1.201 16 N -0.275 5.275 17 C -0.066 4.066 18 C -0.070 4.070 19 H 0.089 0.911 20 C -0.244 4.244 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.845 7.849 -7.247 10.717 hybrid contribution -0.314 -1.224 -1.671 2.095 sum 0.531 6.625 -8.918 11.123 Atomic orbital electron populations 1.21917 0.94928 1.02203 1.01380 1.21625 0.95230 0.94750 0.92300 1.21818 1.00742 0.95868 1.01347 1.62474 1.04777 1.21203 1.36397 1.23163 0.99090 0.87231 1.01026 1.19140 0.83743 0.95006 0.90127 0.93776 1.20924 1.29040 1.01183 1.06752 0.92981 1.24943 0.94328 0.97405 0.95612 1.70116 1.32869 1.35995 1.08994 0.86796 0.79675 0.85432 0.77129 1.20830 1.21315 1.20102 1.61051 1.09655 1.06437 1.50392 1.22072 0.97424 0.93098 0.94053 1.22539 0.88732 0.98642 0.97096 0.91146 1.22426 1.01277 1.01707 0.99037 0.91928 0.93121 0.92169 0.94783 0.92964 0.93134 0.92027 0.91307 0.96133 0.93482 0.86527 0.91463 0.92616 0.91787 0.93427 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.66 37.16 0.32 -1.80 16 2 C 0.07 1.07 2.48 -67.71 -0.17 0.90 16 3 C -0.14 -1.84 9.10 37.16 0.34 -1.51 16 4 N -0.52 -9.64 4.53 -218.56 -0.99 -10.63 16 5 C 0.02 0.50 3.92 -3.77 -0.01 0.49 16 6 C 0.23 5.72 2.45 -68.81 -0.17 5.55 16 7 H 0.04 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.54 -14.79 8.69 -34.44 -0.30 -15.09 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 10 C 0.08 2.34 5.39 -17.82 -0.10 2.25 16 11 N -0.85 -24.67 12.77 55.43 0.71 -23.96 16 12 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 N -0.65 -15.34 5.79 -107.81 -0.62 -15.96 16 17 C 0.06 1.29 6.21 -3.77 -0.02 1.27 16 18 C 0.04 0.71 2.75 -67.65 -0.19 0.52 16 19 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 20 C -0.19 -2.98 8.22 37.16 0.31 -2.68 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.93 6.24 -51.93 -0.32 0.60 16 24 H 0.03 0.54 6.16 -51.93 -0.32 0.22 16 25 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.46 6.00 -51.93 -0.31 1.15 16 29 H 0.02 0.44 6.35 -51.93 -0.33 0.11 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.32 7.42 7.18 -39.29 -0.28 7.13 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.16 5.10 -51.93 -0.26 0.89 16 35 H 0.05 0.71 6.38 -51.93 -0.33 0.38 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -28.32 269.16 -7.61 -35.93 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.75 Total: 4.43 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 0.01 Total: -10.10 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.91 Total: -50.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.32 -7.61 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.035 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds