Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 N 1.46904 * 109.47084 * 119.99971 * 2 1 3 5 5 C 1.46955 * 110.99824 * 51.20254 * 4 2 1 6 6 C 1.53051 * 109.36422 * 183.18558 * 5 4 2 7 7 H 1.09005 * 109.48877 * 61.56815 * 6 5 4 8 8 C 1.50697 * 109.48871 * 181.62549 * 6 5 4 9 9 H 1.07999 * 120.00159 * 359.89681 * 8 6 5 10 10 C 1.37878 * 119.99929 * 179.88933 * 8 6 5 11 11 N 1.31514 * 120.00255 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 120.00084 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47097 * 90.00293 * 12 10 8 14 14 H 1.48502 * 109.47102 * 210.00442 * 12 10 8 15 15 H 1.48498 * 109.46855 * 330.00448 * 12 10 8 16 16 N 1.46955 * 109.36721 * 301.59858 * 6 5 4 17 17 C 1.46955 * 110.87898 * 59.32001 * 16 6 5 18 18 C 1.46959 * 111.00007 * 174.99635 * 4 2 1 19 19 H 1.09004 * 109.48713 * 56.84728 * 18 4 2 20 20 C 1.52999 * 109.50976 * 296.79550 * 18 4 2 21 21 H 1.09002 * 109.47025 * 299.99599 * 1 2 3 22 22 H 1.08996 * 109.46855 * 59.99659 * 1 2 3 23 23 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47460 * 240.00091 * 2 1 3 25 25 H 1.09001 * 109.47321 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47451 * 299.99976 * 3 2 1 27 27 H 1.09002 * 109.46760 * 60.00238 * 3 2 1 28 28 H 1.09001 * 109.48648 * 303.15296 * 5 4 2 29 29 H 1.09001 * 109.49302 * 63.19805 * 5 4 2 30 30 H 0.96998 * 120.00052 * 179.97438 * 11 10 8 31 31 H 1.00901 * 110.99738 * 295.45421 * 16 6 5 32 32 H 1.08998 * 109.49377 * 60.64707 * 17 16 6 33 33 H 1.09000 * 109.48764 * 180.69356 * 17 16 6 34 34 H 1.09005 * 109.46577 * 300.09322 * 20 18 4 35 35 H 1.08997 * 109.46952 * 60.09391 * 20 18 4 36 36 H 1.08999 * 109.46882 * 180.10222 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3847 -2.0100 1.3430 6 6 1.8603 -2.6637 2.6426 7 1 1.5616 -2.0471 3.4903 8 6 1.2418 -4.0317 2.7729 9 1 0.5748 -4.3980 2.0066 10 6 1.5278 -4.8159 3.8703 11 7 2.3398 -4.3697 4.8037 12 14 0.7617 -6.5120 4.0316 13 1 1.6478 -7.5181 3.3929 14 1 0.5915 -6.8436 5.4690 15 1 -0.5632 -6.5224 3.3609 16 7 3.3244 -2.7878 2.6183 17 6 3.9594 -1.4703 2.4748 18 6 3.4838 -0.8166 1.1751 19 1 3.9311 0.1729 1.0809 20 6 3.9035 -1.6819 -0.0149 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.3016 -1.8906 1.3711 29 1 1.6592 -2.6402 0.4970 30 1 2.5406 -4.9213 5.5760 31 1 3.6221 -3.4144 1.8855 32 1 3.6846 -0.8400 3.3205 33 1 5.0424 -1.5897 2.4470 34 1 3.4554 -2.6711 0.0793 35 1 3.5646 -1.2161 -0.9402 36 1 4.9894 -1.7750 -0.0312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218989995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -12.026358 kcal Electronic energy + Delta-G solvation = -15334.644226 eV Core-core repulsion = 13045.809798 eV Total energy + Delta-G solvation = -2288.834428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78107 -36.61879 -34.71247 -32.66896 -31.74323 -28.76446 -28.21248 -26.37616 -25.37303 -22.86088 -21.49828 -19.66645 -18.54944 -17.35498 -16.49859 -16.29333 -15.59493 -15.20062 -15.10073 -14.79765 -14.10977 -13.95148 -13.51929 -13.33361 -13.15978 -12.97936 -12.80792 -12.50181 -12.41061 -12.29794 -12.12326 -12.02620 -11.61050 -11.45259 -11.38908 -10.81472 -10.50791 -9.14429 -8.47442 -7.95347 -6.17911 1.44491 1.45266 1.54862 2.47250 3.05157 3.25526 3.88860 4.01158 4.10091 4.21419 4.28276 4.42476 4.48866 4.53906 4.56427 4.74059 4.79738 4.85300 4.89547 4.97569 4.99015 5.08580 5.13092 5.19653 5.29469 5.33183 5.45563 5.58815 5.76892 6.17317 6.32919 6.41844 6.67622 7.14820 7.17168 7.54971 9.07837 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.009371 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.375576 B = 2987.326753 C = 3335.620498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.133 4.133 4 N -0.536 5.536 5 C 0.043 3.957 6 C 0.232 3.768 7 H -0.003 1.003 8 C -0.556 4.556 9 H 0.050 0.950 10 C 0.035 3.965 11 N -0.879 5.879 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.270 1.270 16 N -0.667 5.667 17 C 0.065 3.935 18 C 0.046 3.954 19 H 0.094 0.906 20 C -0.176 4.176 21 H 0.053 0.947 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.255 0.745 31 H 0.318 0.682 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 8.177 -10.287 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.191 4.191 4 N -0.261 5.261 5 C -0.086 4.086 6 C 0.124 3.876 7 H 0.015 0.985 8 C -0.595 4.595 9 H 0.068 0.932 10 C -0.169 4.169 11 N -0.515 5.515 12 Si 0.775 3.225 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.195 1.195 16 N -0.295 5.295 17 C -0.065 4.065 18 C -0.065 4.065 19 H 0.112 0.888 20 C -0.235 4.235 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.067 8.426 -8.990 12.367 hybrid contribution -0.373 -1.329 -1.136 1.788 sum 0.694 7.096 -10.126 12.384 Atomic orbital electron populations 1.21901 0.94392 1.01486 1.02400 1.21782 0.95791 0.95803 0.90809 1.21773 1.00979 0.94046 1.02292 1.62426 1.05439 1.19525 1.38747 1.22728 0.98734 0.88570 0.98596 1.18842 0.84858 0.93558 0.90382 0.98482 1.21281 1.29093 1.02332 1.06777 0.93210 1.25689 0.94779 1.01110 0.95281 1.70255 1.34342 1.37406 1.09508 0.85733 0.78944 0.80811 0.77023 1.20241 1.21120 1.19495 1.60805 1.08965 1.08667 1.51066 1.22067 0.98299 0.91226 0.94949 1.22464 0.88177 0.99819 0.96001 0.88780 1.22322 1.02300 1.00035 0.98847 0.92746 0.90248 0.93760 0.94391 0.92503 0.90579 0.92723 0.91947 0.96429 0.93616 0.86421 0.93598 0.90603 0.94155 0.91848 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.66 71.98 0.62 -3.29 16 2 C 0.07 1.88 2.48 44.91 0.11 1.99 16 3 C -0.13 -3.07 9.10 71.98 0.65 -2.41 16 4 N -0.54 -19.26 4.53 -845.39 -3.83 -23.09 16 5 C 0.04 1.85 3.92 86.31 0.34 2.19 16 6 C 0.23 12.01 2.45 44.17 0.11 12.12 16 7 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 8 C -0.56 -31.13 8.69 25.60 0.22 -30.91 16 9 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 10 C 0.04 1.99 5.39 84.65 0.46 2.44 16 11 N -0.88 -52.50 12.77 21.45 0.27 -52.23 16 12 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 N -0.67 -32.16 5.79 -495.01 -2.87 -35.03 16 17 C 0.07 2.58 6.21 86.31 0.54 3.11 16 18 C 0.05 1.51 2.75 44.92 0.12 1.63 16 19 H 0.09 2.72 6.30 -2.38 -0.02 2.70 16 20 C -0.18 -5.25 8.22 71.98 0.59 -4.66 16 21 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.32 6.24 -2.39 -0.01 1.31 16 24 H 0.04 1.08 6.16 -2.39 -0.01 1.06 16 25 H 0.06 1.25 6.46 -2.39 -0.02 1.24 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.70 6.00 -2.39 -0.01 2.68 16 29 H 0.02 0.76 6.35 -2.39 -0.02 0.74 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.32 15.05 7.18 -89.69 -0.64 14.40 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.04 1.40 5.10 -2.38 -0.01 1.38 16 35 H 0.06 1.69 6.38 -2.39 -0.02 1.68 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.64 269.16 -0.22 -61.86 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.41 Total: 20.09 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 3.77 Total: -17.78 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -6.42 Total: -110.34 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.64 -0.22 -61.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218989995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.832 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds