Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 N 1.46901 * 109.46815 * 120.00192 * 2 1 3 5 5 C 1.46954 * 111.00023 * 300.31045 * 4 2 1 6 6 C 1.53047 * 109.36276 * 176.81371 * 5 4 2 7 7 H 1.09001 * 109.49044 * 298.43493 * 6 5 4 8 8 C 1.50704 * 109.48973 * 178.39388 * 6 5 4 9 9 H 1.07998 * 119.99591 * 359.97438 * 8 6 5 10 10 C 1.37876 * 120.00019 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99990 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99784 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47017 * 89.99830 * 12 10 8 14 14 H 1.48505 * 109.47036 * 209.99556 * 12 10 8 15 15 H 1.48499 * 109.47423 * 329.99549 * 12 10 8 16 16 N 1.46963 * 109.36685 * 58.40324 * 6 5 4 17 17 C 1.46959 * 110.87572 * 300.67986 * 16 6 5 18 18 C 1.46961 * 110.99483 * 176.51587 * 4 2 1 19 19 H 1.08991 * 109.49240 * 63.21947 * 18 4 2 20 20 C 1.53003 * 109.48807 * 303.15150 * 18 4 2 21 21 H 1.09005 * 109.47011 * 59.99503 * 1 2 3 22 22 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47276 * 300.00096 * 1 2 3 24 24 H 1.09000 * 109.46631 * 240.00236 * 2 1 3 25 25 H 1.08999 * 109.47301 * 56.63519 * 3 2 1 26 26 H 1.09011 * 109.46979 * 176.62928 * 3 2 1 27 27 H 1.08997 * 109.47373 * 296.62967 * 3 2 1 28 28 H 1.09003 * 109.49179 * 296.77971 * 5 4 2 29 29 H 1.09000 * 109.48606 * 56.84989 * 5 4 2 30 30 H 0.97003 * 119.99690 * 180.02562 * 11 10 8 31 31 H 1.00896 * 110.99887 * 176.81141 * 16 6 5 32 32 H 1.09000 * 109.48338 * 179.28377 * 17 16 6 33 33 H 1.08993 * 109.48874 * 299.34728 * 17 16 6 34 34 H 1.09003 * 109.47040 * 66.45704 * 20 18 4 35 35 H 1.09004 * 109.47027 * 186.45586 * 20 18 4 36 36 H 1.09003 * 109.47087 * 306.45842 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5423 -0.0305 2.4215 6 6 2.0066 -0.8259 3.6439 7 1 1.5790 -1.8279 3.6096 8 6 1.5522 -0.1281 4.9000 9 1 0.9890 0.7910 4.8335 10 6 1.8565 -0.6625 6.1340 11 7 2.5428 -1.7815 6.2149 12 14 1.2939 0.2028 7.6910 13 1 -0.0477 -0.3010 8.0801 14 1 2.2609 -0.0684 8.7850 15 1 1.2215 1.6656 7.4458 16 7 3.4733 -0.9182 3.6369 17 6 3.9505 -1.5802 2.4148 18 6 3.4863 -0.7848 1.1924 19 1 3.9138 0.2172 1.2266 20 6 3.9470 -1.4936 -0.0829 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.6282 1.9735 0.8583 26 1 3.1284 1.4431 0.0604 27 1 1.7268 1.9386 -0.9186 28 1 1.9478 0.9801 2.4698 29 1 0.4533 0.0144 2.4091 30 1 2.7565 -2.1577 7.0831 31 1 3.8095 -1.3939 4.4607 32 1 5.0395 -1.6252 2.4272 33 1 3.5451 -2.5908 2.3666 34 1 3.7156 -0.8720 -0.9479 35 1 5.0226 -1.6642 -0.0353 36 1 3.4311 -2.4494 -0.1739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = 0.385419 kcal Electronic energy + Delta-G solvation = -15277.680733 eV Core-core repulsion = 12989.384521 eV Total energy + Delta-G solvation = -2288.296213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98579 -35.01318 -33.05356 -31.25090 -29.98083 -27.24107 -26.91113 -24.32298 -23.97903 -20.91571 -20.06219 -18.05900 -16.60181 -15.53112 -14.63490 -14.49071 -14.24239 -13.92140 -13.55169 -13.20927 -12.66630 -12.34265 -12.07894 -11.99354 -11.62203 -11.44322 -11.20849 -10.97766 -10.91492 -10.87615 -10.66278 -10.28147 -10.04665 -9.80059 -9.31470 -9.01967 -8.56232 -7.57217 -6.80961 -6.07054 -4.09670 3.30841 3.37470 3.41434 4.38739 4.56213 5.17547 5.22719 5.39814 5.51148 5.53652 5.71056 5.81507 5.84514 5.97929 6.05048 6.08619 6.16204 6.26366 6.28953 6.40854 6.45485 6.48501 6.57770 6.60252 6.75852 6.86050 7.01989 7.53407 7.80142 7.83695 7.95893 8.25840 8.70212 9.02499 9.16040 9.57970 11.03641 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.009574 C = 0.008270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.997037 B = 2923.993486 C = 3384.985632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 C -0.185 4.185 4 N -0.530 5.530 5 C 0.066 3.934 6 C 0.219 3.781 7 H 0.003 0.997 8 C -0.504 4.504 9 H 0.058 0.942 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.899 3.101 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.687 5.687 17 C 0.062 3.938 18 C 0.084 3.916 19 H 0.043 0.957 20 C -0.144 4.144 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.263 0.737 31 H 0.362 0.638 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 2.100 -10.593 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 C -0.244 4.244 4 N -0.255 5.255 5 C -0.061 4.061 6 C 0.111 3.889 7 H 0.020 0.980 8 C -0.543 4.543 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.541 5.541 12 Si 0.727 3.273 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.324 5.324 17 C -0.069 4.069 18 C -0.024 4.024 19 H 0.060 0.940 20 C -0.202 4.202 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.234 2.121 -10.692 10.903 hybrid contribution -0.124 0.324 1.066 1.121 sum 0.111 2.445 -9.626 9.932 Atomic orbital electron populations 1.21860 0.94946 1.02102 1.01226 1.21702 0.95366 0.92125 0.94528 1.22458 1.01527 0.98726 1.01657 1.62495 1.09296 1.51556 1.02169 1.22358 0.98665 0.96315 0.88805 1.19033 0.84691 0.94222 0.90963 0.97979 1.21122 1.33807 1.09131 0.90277 0.92334 1.24978 0.94673 0.94642 0.99182 1.69684 1.39936 1.19546 1.24899 0.86494 0.78255 0.79983 0.82603 1.20769 1.21229 1.19889 1.60985 1.13099 1.54940 1.03404 1.21876 0.97709 0.95263 0.92016 1.21614 0.87917 0.98082 0.94828 0.93951 1.21866 1.00444 1.00915 0.96948 0.93113 0.92160 0.92240 0.90610 0.92164 0.92640 0.93064 0.95126 0.91688 0.92678 0.81377 0.92795 0.96199 0.93214 0.92716 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.95 37.16 0.33 -1.73 16 2 C 0.07 1.11 2.62 -67.71 -0.18 0.94 16 3 C -0.18 -2.72 8.48 37.16 0.32 -2.40 16 4 N -0.53 -10.13 4.53 -218.57 -0.99 -11.12 16 5 C 0.07 1.45 4.05 -3.77 -0.02 1.44 16 6 C 0.22 5.69 2.55 -68.80 -0.18 5.51 16 7 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 8 C -0.50 -14.02 8.76 -34.44 -0.30 -14.32 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 10 C 0.07 1.84 5.35 -17.82 -0.10 1.75 16 11 N -0.90 -25.57 11.50 55.43 0.64 -24.93 16 12 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 N -0.69 -17.14 6.53 -107.81 -0.70 -17.84 16 17 C 0.06 1.30 6.00 -3.77 -0.02 1.28 16 18 C 0.08 1.56 2.16 -67.65 -0.15 1.41 16 19 H 0.04 0.82 6.48 -51.93 -0.34 0.48 16 20 C -0.14 -2.11 8.65 37.16 0.32 -1.79 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.91 6.33 -51.93 -0.33 0.58 16 24 H 0.08 1.09 6.20 -51.93 -0.32 0.77 16 25 H 0.06 0.96 6.67 -51.93 -0.35 0.62 16 26 H 0.05 0.84 6.39 -51.92 -0.33 0.51 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.70 6.57 -51.93 -0.34 0.36 16 29 H 0.06 1.40 6.13 -51.93 -0.32 1.08 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.36 9.74 6.72 -39.29 -0.26 9.48 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.66 6.66 -51.93 -0.35 0.31 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 270.32 15.07 4.07 4.07 Total: -1.00 -28.15 270.32 -7.83 -35.97 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.86 Total: 5.39 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 0.04 Total: -7.92 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -1.06 Total: -53.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.15 -7.83 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.357 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds