Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 N 1.46901 * 109.46815 * 120.00192 * 2 1 3 5 5 C 1.46954 * 111.00023 * 300.31045 * 4 2 1 6 6 C 1.53047 * 109.36276 * 176.81371 * 5 4 2 7 7 H 1.09001 * 109.49044 * 298.43493 * 6 5 4 8 8 C 1.50704 * 109.48973 * 178.39388 * 6 5 4 9 9 H 1.07998 * 119.99591 * 359.97438 * 8 6 5 10 10 C 1.37876 * 120.00019 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99990 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99784 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47017 * 89.99830 * 12 10 8 14 14 H 1.48505 * 109.47036 * 209.99556 * 12 10 8 15 15 H 1.48499 * 109.47423 * 329.99549 * 12 10 8 16 16 N 1.46963 * 109.36685 * 58.40324 * 6 5 4 17 17 C 1.46959 * 110.87572 * 300.67986 * 16 6 5 18 18 C 1.46961 * 110.99483 * 176.51587 * 4 2 1 19 19 H 1.08991 * 109.49240 * 63.21947 * 18 4 2 20 20 C 1.53003 * 109.48807 * 303.15150 * 18 4 2 21 21 H 1.09005 * 109.47011 * 59.99503 * 1 2 3 22 22 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47276 * 300.00096 * 1 2 3 24 24 H 1.09000 * 109.46631 * 240.00236 * 2 1 3 25 25 H 1.08999 * 109.47301 * 56.63519 * 3 2 1 26 26 H 1.09011 * 109.46979 * 176.62928 * 3 2 1 27 27 H 1.08997 * 109.47373 * 296.62967 * 3 2 1 28 28 H 1.09003 * 109.49179 * 296.77971 * 5 4 2 29 29 H 1.09000 * 109.48606 * 56.84989 * 5 4 2 30 30 H 0.97003 * 119.99690 * 180.02562 * 11 10 8 31 31 H 1.00896 * 110.99887 * 176.81141 * 16 6 5 32 32 H 1.09000 * 109.48338 * 179.28377 * 17 16 6 33 33 H 1.08993 * 109.48874 * 299.34728 * 17 16 6 34 34 H 1.09003 * 109.47040 * 66.45704 * 20 18 4 35 35 H 1.09004 * 109.47027 * 186.45586 * 20 18 4 36 36 H 1.09003 * 109.47087 * 306.45842 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5423 -0.0305 2.4215 6 6 2.0066 -0.8259 3.6439 7 1 1.5790 -1.8279 3.6096 8 6 1.5522 -0.1281 4.9000 9 1 0.9890 0.7910 4.8335 10 6 1.8565 -0.6625 6.1340 11 7 2.5428 -1.7815 6.2149 12 14 1.2939 0.2028 7.6910 13 1 -0.0477 -0.3010 8.0801 14 1 2.2609 -0.0684 8.7850 15 1 1.2215 1.6656 7.4458 16 7 3.4733 -0.9182 3.6369 17 6 3.9505 -1.5802 2.4148 18 6 3.4863 -0.7848 1.1924 19 1 3.9138 0.2172 1.2266 20 6 3.9470 -1.4936 -0.0829 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.6282 1.9735 0.8583 26 1 3.1284 1.4431 0.0604 27 1 1.7268 1.9386 -0.9186 28 1 1.9478 0.9801 2.4698 29 1 0.4533 0.0144 2.4091 30 1 2.7565 -2.1577 7.0831 31 1 3.8095 -1.3939 4.4607 32 1 5.0395 -1.6252 2.4272 33 1 3.5451 -2.5908 2.3666 34 1 3.7156 -0.8720 -0.9479 35 1 5.0226 -1.6642 -0.0353 36 1 3.4311 -2.4494 -0.1739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = -19.865053 kcal Electronic energy + Delta-G solvation = -15278.558859 eV Core-core repulsion = 12989.384521 eV Total energy + Delta-G solvation = -2289.174339 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53414 -36.73548 -34.79510 -33.07982 -31.54549 -28.97385 -28.07281 -26.10672 -25.68998 -22.56678 -21.64571 -19.63839 -18.59202 -17.28613 -16.32214 -16.17425 -15.77736 -15.54905 -14.97797 -14.89596 -14.44341 -13.80178 -13.66891 -13.37682 -13.03021 -12.91022 -12.75087 -12.64278 -12.49025 -12.36197 -12.14750 -11.94401 -11.60117 -11.48876 -11.11398 -10.91213 -10.66451 -9.11327 -8.80035 -8.18466 -6.29963 1.41648 1.42770 1.53622 2.41297 3.07767 3.09353 3.89997 4.01378 4.07744 4.25721 4.36094 4.43323 4.51300 4.58928 4.67262 4.77692 4.81545 4.87127 4.87927 4.94351 4.99923 5.06807 5.11913 5.17961 5.31957 5.38470 5.43735 5.55757 5.76278 6.06866 6.33671 6.42695 6.62042 6.95858 7.09152 7.41898 8.91189 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.009574 C = 0.008270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.997037 B = 2923.993486 C = 3384.985632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 C -0.178 4.178 4 N -0.541 5.541 5 C 0.084 3.916 6 C 0.220 3.780 7 H -0.043 1.043 8 C -0.530 4.530 9 H 0.056 0.944 10 C 0.020 3.980 11 N -0.924 5.924 12 Si 0.966 3.034 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.269 1.269 16 N -0.695 5.695 17 C 0.059 3.941 18 C 0.086 3.914 19 H 0.036 0.964 20 C -0.133 4.133 21 H 0.081 0.919 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.266 0.734 31 H 0.347 0.653 32 H 0.074 0.926 33 H 0.004 0.996 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 2.944 -12.039 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.237 4.237 4 N -0.266 5.266 5 C -0.044 4.044 6 C 0.112 3.888 7 H -0.026 1.026 8 C -0.569 4.569 9 H 0.074 0.926 10 C -0.179 4.179 11 N -0.565 5.565 12 Si 0.791 3.209 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.194 1.194 16 N -0.330 5.330 17 C -0.071 4.071 18 C -0.023 4.023 19 H 0.054 0.946 20 C -0.191 4.191 21 H 0.100 0.900 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.316 2.971 -12.172 12.534 hybrid contribution -0.133 0.019 1.478 1.484 sum 0.183 2.990 -10.694 11.106 Atomic orbital electron populations 1.21847 0.94101 1.01969 1.01932 1.21887 0.96116 0.92655 0.93299 1.22386 1.01054 0.97961 1.02303 1.62463 1.09861 1.52027 1.02266 1.21988 0.98422 0.95068 0.88961 1.18929 0.85214 0.92202 0.92502 1.02554 1.21440 1.34474 1.09355 0.91644 0.92602 1.25783 0.94624 0.95265 1.02268 1.69805 1.40433 1.20574 1.25660 0.85448 0.77954 0.78927 0.78579 1.20081 1.20683 1.19394 1.60983 1.12306 1.55351 1.04323 1.22052 0.98820 0.94631 0.91641 1.21639 0.87526 0.97718 0.95390 0.94563 1.21791 1.01447 1.00555 0.95316 0.90020 0.92732 0.93899 0.88445 0.94101 0.93072 0.90113 0.96114 0.91819 0.92521 0.83186 0.90810 0.97773 0.90997 0.90938 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.95 71.98 0.64 -3.12 16 2 C 0.07 1.96 2.62 44.91 0.12 2.08 16 3 C -0.18 -4.79 8.48 71.98 0.61 -4.18 16 4 N -0.54 -20.29 4.53 -845.42 -3.83 -24.12 16 5 C 0.08 3.75 4.05 86.31 0.35 4.10 16 6 C 0.22 11.85 2.55 44.17 0.11 11.97 16 7 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 16 8 C -0.53 -30.30 8.76 25.60 0.22 -30.08 16 9 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 10 C 0.02 1.11 5.35 84.65 0.45 1.56 16 11 N -0.92 -53.72 11.50 21.45 0.25 -53.47 16 12 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 N -0.69 -35.60 6.53 -495.00 -3.23 -38.83 16 17 C 0.06 2.48 6.00 86.31 0.52 3.00 16 18 C 0.09 3.06 2.16 44.92 0.10 3.16 16 19 H 0.04 1.35 6.48 -2.39 -0.02 1.34 16 20 C -0.13 -3.53 8.65 71.98 0.62 -2.90 16 21 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.04 1.27 6.33 -2.39 -0.02 1.26 16 24 H 0.10 2.43 6.20 -2.39 -0.01 2.42 16 25 H 0.04 1.25 6.67 -2.39 -0.02 1.23 16 26 H 0.05 1.41 6.39 -2.38 -0.02 1.40 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.02 0.96 6.57 -2.39 -0.02 0.95 16 29 H 0.06 2.82 6.13 -2.39 -0.01 2.80 16 30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.35 19.30 6.72 -89.70 -0.60 18.70 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.07 1.60 6.66 -2.39 -0.02 1.58 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -61.89 270.32 -0.59 -62.48 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.45 Total: 22.06 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.75 Total: -14.42 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -6.81 Total: -116.43 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.89 -0.59 -62.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds